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The map label for this gene is 167622191

Identifier: 167622191

GI number: 167622191

Start: 300630

End: 301259

Strand: Reverse

Name: 167622191

Synonym: Shal_0250

Alternate gene names: NA

Gene position: 301259-300630 (Counterclockwise)

Preceding gene: 167622192

Following gene: 167622189

Centisome position: 5.76

GC content: 46.03

Gene sequence:

>630_bases
ATGAGGCTCACATGGATTATTACAGCCATTTTAATGGTCGCTGCGGGGGTCTACGCCAGTATTGGGCTCAACTCACCTAA
ACCGTTAGCGCTGCAAACCAGCTTTGAGTATCCATCGCCGCAGCCATTAGCGCCATTTTCACTCATTGACCAACACGGTA
ACACATTCACTAACGCCGACTTAAACGGCAAGTGGAGCCTATTTTTCATCGGCTATACCTCTTGCCCCGATGTTTGCCCA
ACGACTATGGGTAAGTTAACCTCGGCGTACCCGAGTCTGGCTCAAGGTGAAGATCTACAGGTTATCTTTCTATCCGTTGA
CCCACAAAGAGACTCTACGAGCACATTAGAAAGTTATATTCGCTTCTTTAATCCTGAGTTCGTGGCTGTAACCGGAGAAC
ATAAACAACTACTGCCGGTAACCCGTAGCCTAGGTTTTGTTTATGCCATGGTGGGAGAAGGTGAAGACTATCAGGTCGAT
CACAGTGCCTCATTTGCCCTAGTCTCGCCTAAAGGTGAGAAAGTTGCGATTATCAAGCCTAAGTCAAAGACTCCAGGACA
ATTGCCTCAGATCAAAAATCGCGACTTAATTCATGACGTAAACGCAATTATTGATAAATATTCGGGTTAA

Upstream 100 bases:

>100_bases
TGTGGCTATAAATCTATGGTTATAAATCTATGCCTATAAAAATTATTAGTATTAGCTGTCAGGTATTGGGCGCACTTCGT
CATACGCTAGGAGATAAAAG

Downstream 100 bases:

>100_bases
TACCGTTCACGGAAAGGAATTGCTCAGAGAAAATGCGTTGATTTAGAAAGATAAGAATGAACCACGAAGGACACAAAGAG
CACGAAGTGAGCGCTTCGTG

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MRLTWIITAILMVAAGVYASIGLNSPKPLALQTSFEYPSPQPLAPFSLIDQHGNTFTNADLNGKWSLFFIGYTSCPDVCP
TTMGKLTSAYPSLAQGEDLQVIFLSVDPQRDSTSTLESYIRFFNPEFVAVTGEHKQLLPVTRSLGFVYAMVGEGEDYQVD
HSASFALVSPKGEKVAIIKPKSKTPGQLPQIKNRDLIHDVNAIIDKYSG

Sequences:

>Translated_209_residues
MRLTWIITAILMVAAGVYASIGLNSPKPLALQTSFEYPSPQPLAPFSLIDQHGNTFTNADLNGKWSLFFIGYTSCPDVCP
TTMGKLTSAYPSLAQGEDLQVIFLSVDPQRDSTSTLESYIRFFNPEFVAVTGEHKQLLPVTRSLGFVYAMVGEGEDYQVD
HSASFALVSPKGEKVAIIKPKSKTPGQLPQIKNRDLIHDVNAIIDKYSG
>Mature_209_residues
MRLTWIITAILMVAAGVYASIGLNSPKPLALQTSFEYPSPQPLAPFSLIDQHGNTFTNADLNGKWSLFFIGYTSCPDVCP
TTMGKLTSAYPSLAQGEDLQVIFLSVDPQRDSTSTLESYIRFFNPEFVAVTGEHKQLLPVTRSLGFVYAMVGEGEDYQVD
HSASFALVSPKGEKVAIIKPKSKTPGQLPQIKNRDLIHDVNAIIDKYSG

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=133, Percent_Identity=36.0902255639098, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI281182722, Length=133, Percent_Identity=36.0902255639098, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI281182716, Length=133, Percent_Identity=36.0902255639098, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI153791313, Length=133, Percent_Identity=36.0902255639098, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI4759068, Length=135, Percent_Identity=35.5555555555556, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17531419, Length=138, Percent_Identity=28.9855072463768, Blast_Score=77, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6319498, Length=202, Percent_Identity=30.1980198019802, Blast_Score=103, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6319511, Length=176, Percent_Identity=31.8181818181818, Blast_Score=98, Evalue=8e-22,
Organism=Drosophila melanogaster, GI19920710, Length=136, Percent_Identity=35.2941176470588, Blast_Score=93, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22888; Mature: 22888

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTWIITAILMVAAGVYASIGLNSPKPLALQTSFEYPSPQPLAPFSLIDQHGNTFTNAD
CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCEEECCC
LNGKWSLFFIGYTSCPDVCPTTMGKLTSAYPSLAQGEDLQVIFLSVDPQRDSTSTLESYI
CCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
RFFNPEFVAVTGEHKQLLPVTRSLGFVYAMVGEGEDYQVDHSASFALVSPKGEKVAIIKP
HHCCCCEEEEECCCCEEHHHHHHCCEEEEEECCCCCEEECCCCCEEEECCCCCEEEEECC
KSKTPGQLPQIKNRDLIHDVNAIIDKYSG
CCCCCCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRLTWIITAILMVAAGVYASIGLNSPKPLALQTSFEYPSPQPLAPFSLIDQHGNTFTNAD
CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCEEECCC
LNGKWSLFFIGYTSCPDVCPTTMGKLTSAYPSLAQGEDLQVIFLSVDPQRDSTSTLESYI
CCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
RFFNPEFVAVTGEHKQLLPVTRSLGFVYAMVGEGEDYQVDHSASFALVSPKGEKVAIIKP
HHCCCCEEEEECCCCEEHHHHHHCCEEEEEECCCCCEEECCCCCEEEECCCCCEEEEECC
KSKTPGQLPQIKNRDLIHDVNAIIDKYSG
CCCCCCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]