| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622137
Identifier: 167622137
GI number: 167622137
Start: 231805
End: 232494
Strand: Direct
Name: 167622137
Synonym: Shal_0196
Alternate gene names: NA
Gene position: 231805-232494 (Clockwise)
Preceding gene: 167622135
Following gene: 167622138
Centisome position: 4.43
GC content: 48.55
Gene sequence:
>690_bases ATGAGCAAAATTGAATCGTTTGCTGCTATCTATGCCAGAGCATCGCAGCGAAAAGGGGGCGACCAAAGCCTAGGAAGCCT GTTACCGACAGGCCTTCGCAGCGAAGAGATAGAACAATTTTCCGATGCTGTTCTGTTATCTGAGATCAGCAAGAAGGTGT TTCAGAGTGGTTTTGTATGGCGGATTGTCGAAGCCAATTGGCCGGAATATGAGAAAGCCTTCTTTGGCTTTGAGCCATTT AAAGTGCTGATGTTGTCGCCGGAACAGTTACAAGATCGCGCAAGTGATCCTAAATTGATCCGCCACCTCAAAAAAACCAT GGCGATCTATGACAATGCCCATATGGTGAATGATCTTGCGGGTGAGCACGGCAGTTTCGCCAAGTTTATTGCAGACTGGC CGAGTGAAGATATTACCGGACTTTGGGCCGAGCTTAAACGTAAAGGTGCTAGGCTCGGTGGTAACACTGGCCCTTACTTC CTACGCTCTATGGGCAAGGACACCTTTCTATTAACGGCTGATGTGCAAGGGTATTTGAAGAGCCACGGCCTCGTGGATTA CGGCTTTAGCTCTAAGGCAGGATTGAAGCAGGTGCAGAGCGTGTTTAACCACTGGCAGCAAGAATCGGGTCGTAGCCTAG CCGATATCAGTAGAGTCTTAGCCTGCAGTGTTGGTGATAATCGTGTTTAA
Upstream 100 bases:
>100_bases ATTCAGATCTTTGAGTGATAAAGATATGCCGCTTCAACTGTTTAGTGAATATAAGGGATGGCTTAATTTATTTAATCTCT AATTTTGAAGAGTGAAAAGT
Downstream 100 bases:
>100_bases ACTAAAACCTGTATTTTGAGATGAGTTAGTCGGCATAAAAACCTTTTAAATTAACGAGTAATACTAGATTAATGTTAATG CTTTAATTGTTAATCATACT
Product: 3-methyladenine DNA glycosylase
Products: NA
Alternate protein names: DNA-3-Methyladenine Glycosylase; 3-Methyladenine DNA Glycosylase-Like Protein; 3-Methyl-Adenine DNA Glycosylase; DNA Glycosylase Protein; DNA-3-Methyladenine Glycosylase I; DNA-Glycosylase
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MSKIESFAAIYARASQRKGGDQSLGSLLPTGLRSEEIEQFSDAVLLSEISKKVFQSGFVWRIVEANWPEYEKAFFGFEPF KVLMLSPEQLQDRASDPKLIRHLKKTMAIYDNAHMVNDLAGEHGSFAKFIADWPSEDITGLWAELKRKGARLGGNTGPYF LRSMGKDTFLLTADVQGYLKSHGLVDYGFSSKAGLKQVQSVFNHWQQESGRSLADISRVLACSVGDNRV
Sequences:
>Translated_229_residues MSKIESFAAIYARASQRKGGDQSLGSLLPTGLRSEEIEQFSDAVLLSEISKKVFQSGFVWRIVEANWPEYEKAFFGFEPF KVLMLSPEQLQDRASDPKLIRHLKKTMAIYDNAHMVNDLAGEHGSFAKFIADWPSEDITGLWAELKRKGARLGGNTGPYF LRSMGKDTFLLTADVQGYLKSHGLVDYGFSSKAGLKQVQSVFNHWQQESGRSLADISRVLACSVGDNRV >Mature_228_residues SKIESFAAIYARASQRKGGDQSLGSLLPTGLRSEEIEQFSDAVLLSEISKKVFQSGFVWRIVEANWPEYEKAFFGFEPFK VLMLSPEQLQDRASDPKLIRHLKKTMAIYDNAHMVNDLAGEHGSFAKFIADWPSEDITGLWAELKRKGARLGGNTGPYFL RSMGKDTFLLTADVQGYLKSHGLVDYGFSSKAGLKQVQSVFNHWQQESGRSLADISRVLACSVGDNRV
Specific function: Unknown
COG id: COG2818
COG function: function code L; 3-methyladenine DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25560; Mature: 25429
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIESFAAIYARASQRKGGDQSLGSLLPTGLRSEEIEQFSDAVLLSEISKKVFQSGFVW CCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE RIVEANWPEYEKAFFGFEPFKVLMLSPEQLQDRASDPKLIRHLKKTMAIYDNAHMVNDLA EEEECCCCHHHHHHCCCCCHHHEEECHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH GEHGSFAKFIADWPSEDITGLWAELKRKGARLGGNTGPYFLRSMGKDTFLLTADVQGYLK CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEEHHHHHHHH SHGLVDYGFSSKAGLKQVQSVFNHWQQESGRSLADISRVLACSVGDNRV HCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure SKIESFAAIYARASQRKGGDQSLGSLLPTGLRSEEIEQFSDAVLLSEISKKVFQSGFVW CHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE RIVEANWPEYEKAFFGFEPFKVLMLSPEQLQDRASDPKLIRHLKKTMAIYDNAHMVNDLA EEEECCCCHHHHHHCCCCCHHHEEECHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH GEHGSFAKFIADWPSEDITGLWAELKRKGARLGGNTGPYFLRSMGKDTFLLTADVQGYLK CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEEHHHHHHHH SHGLVDYGFSSKAGLKQVQSVFNHWQQESGRSLADISRVLACSVGDNRV HCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA