| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622103
Identifier: 167622103
GI number: 167622103
Start: 187755
End: 188939
Strand: Direct
Name: 167622103
Synonym: Shal_0162
Alternate gene names: NA
Gene position: 187755-188939 (Clockwise)
Preceding gene: 167622102
Following gene: 167622104
Centisome position: 3.59
GC content: 46.33
Gene sequence:
>1185_bases ATGGGTGATTCAATTGAATCAAGCAGCTTAATCAAAATACCCGTCTCTAAGCTAAAAGTGGGTATGTTTGTTGAGGCCAT CGACAAGAATAAGAGTCTAGTCAATATCGCTAATGCTGGCCAAATTCGCAGTGCCGAGGCGATACTGAGGCTGCATAAGA GTAATGTGACTCATGTGTGGGTCAATGGTGAACGCTCGTTGCCGGAGTTAGGCTTGGGCAGAGTCGCTTCTGCACCTAAA CCCTTTATCAGAAAAGTCACCGTTGAACGTGCAACGACTCAGATGCAGGCCAAGGAGTTAATCGTTGAGGCAAAAGATCT CATCCAAAAGGTGCTGTCTGATACATTTGAAGGTAAAGCGGTAGAGGTTGAACCGTTCGAGGCGTTAGCAGACAGCATGA TTGAGTCTGTATTACTGGATGCCGATGCCCTCAAGTGTGTCTCTGCAATGCGCTCAAAAGATGTCTACCTGCTTGAACAC TCTATTAATGTTGCCTTCTTGCTGGTGACGTTTGGACGCTATCTGAACTTCGATGCTGATATGCTGCGGCAAATCGCTAT TGGTGGTATTTTACACGATATCGGTAAGATCAAGATCGATAGTAAAATTTTGAATAAACCCGGTAAGTTAACTGCCGAAG AGTTTGAGCATGTGAAGCTGCATCAGACTTACGCCATTGAGATCATGGGTCAAACCAAAGGCCTATCTCAGATCAGTAAA GATATTAGCCTAATGCACCATGAGAAACTCGACGGATGTGGTTACCCTCTTGGTCTCAAGGGAGAGCAGATCCCTATTCA TGGGCGTATGAGTTGCATCGTCGATATCTTCGACGCCTTAACGGCAACTCGCTGCTACAAAGAAGCGATGAGTCCAGCAT CGGCATTTAAGATCTTGCTGGGCATGACTCCAACGCATTTAGATCAAGGACTCGTCTACGAGTTTATCCGCTGTATTGGT GTCTATCCGGTTGGCTCGTTGGTGCAGTTGTCGGATGGACGTATCGGGATTGTATGGGAAGCTAAGGGCCGAGATGTGCT ACATCCTAAGGTTAAGTGTTTCTATTCGGTGAAGCATAAATGCTATACCCAAGTGGAGGTTGTCGACCTGCTCAGATCGC CACTGAATATCGAGAAAGGCATATCGCCGAGTAGCTTAGAGATCGACCCCACTCCATTCTATTAA
Upstream 100 bases:
>100_bases CTCGGTATCGGCTGAGTCACAACATCGAATTGCAGTGAGGGGTGCAGTGGCTGATTAGTCGCTGTATTTAAAGCTAAATC ATCCGGAGACCTAAAAGATA
Downstream 100 bases:
>100_bases ACTCAATTTTGCTCATTTAGGCGCCGATAGCAACTCGGCGCTTTTTTGTATCGCCATATCTCTCATTTATCCTCAAAGCT TGAGCCGGCTCCATTTTTGA
Product: metal dependent phosphohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 394; Mature: 393
Protein sequence:
>394_residues MGDSIESSSLIKIPVSKLKVGMFVEAIDKNKSLVNIANAGQIRSAEAILRLHKSNVTHVWVNGERSLPELGLGRVASAPK PFIRKVTVERATTQMQAKELIVEAKDLIQKVLSDTFEGKAVEVEPFEALADSMIESVLLDADALKCVSAMRSKDVYLLEH SINVAFLLVTFGRYLNFDADMLRQIAIGGILHDIGKIKIDSKILNKPGKLTAEEFEHVKLHQTYAIEIMGQTKGLSQISK DISLMHHEKLDGCGYPLGLKGEQIPIHGRMSCIVDIFDALTATRCYKEAMSPASAFKILLGMTPTHLDQGLVYEFIRCIG VYPVGSLVQLSDGRIGIVWEAKGRDVLHPKVKCFYSVKHKCYTQVEVVDLLRSPLNIEKGISPSSLEIDPTPFY
Sequences:
>Translated_394_residues MGDSIESSSLIKIPVSKLKVGMFVEAIDKNKSLVNIANAGQIRSAEAILRLHKSNVTHVWVNGERSLPELGLGRVASAPK PFIRKVTVERATTQMQAKELIVEAKDLIQKVLSDTFEGKAVEVEPFEALADSMIESVLLDADALKCVSAMRSKDVYLLEH SINVAFLLVTFGRYLNFDADMLRQIAIGGILHDIGKIKIDSKILNKPGKLTAEEFEHVKLHQTYAIEIMGQTKGLSQISK DISLMHHEKLDGCGYPLGLKGEQIPIHGRMSCIVDIFDALTATRCYKEAMSPASAFKILLGMTPTHLDQGLVYEFIRCIG VYPVGSLVQLSDGRIGIVWEAKGRDVLHPKVKCFYSVKHKCYTQVEVVDLLRSPLNIEKGISPSSLEIDPTPFY >Mature_393_residues GDSIESSSLIKIPVSKLKVGMFVEAIDKNKSLVNIANAGQIRSAEAILRLHKSNVTHVWVNGERSLPELGLGRVASAPKP FIRKVTVERATTQMQAKELIVEAKDLIQKVLSDTFEGKAVEVEPFEALADSMIESVLLDADALKCVSAMRSKDVYLLEHS INVAFLLVTFGRYLNFDADMLRQIAIGGILHDIGKIKIDSKILNKPGKLTAEEFEHVKLHQTYAIEIMGQTKGLSQISKD ISLMHHEKLDGCGYPLGLKGEQIPIHGRMSCIVDIFDALTATRCYKEAMSPASAFKILLGMTPTHLDQGLVYEFIRCIGV YPVGSLVQLSDGRIGIVWEAKGRDVLHPKVKCFYSVKHKCYTQVEVVDLLRSPLNIEKGISPSSLEIDPTPFY
Specific function: Unknown
COG id: COG2206
COG function: function code T; HD-GYP domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR003607 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43557; Mature: 43426
Theoretical pI: Translated: 7.59; Mature: 7.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDSIESSSLIKIPVSKLKVGMFVEAIDKNKSLVNIANAGQIRSAEAILRLHKSNVTHVW CCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEE VNGERSLPELGLGRVASAPKPFIRKVTVERATTQMQAKELIVEAKDLIQKVLSDTFEGKA ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE VEVEPFEALADSMIESVLLDADALKCVSAMRSKDVYLLEHSINVAFLLVTFGRYLNFDAD EEECHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEECCCHHHHEEHHHHHCCCCHH MLRQIAIGGILHDIGKIKIDSKILNKPGKLTAEEFEHVKLHQTYAIEIMGQTKGLSQISK HHHHHHHHHHHHHHCCEEECHHHHCCCCCCCHHHHHHEEEEEEEEEEEEECCCCHHHHHH DISLMHHEKLDGCGYPLGLKGEQIPIHGRMSCIVDIFDALTATRCYKEAMSPASAFKILL HHHHHHHHCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GMTPTHLDQGLVYEFIRCIGVYPVGSLVQLSDGRIGIVWEAKGRDVLHPKVKCFYSVKHK CCCHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHH CYTQVEVVDLLRSPLNIEKGISPSSLEIDPTPFY HHHHHHHHHHHHCCCCHHCCCCCCCEECCCCCCC >Mature Secondary Structure GDSIESSSLIKIPVSKLKVGMFVEAIDKNKSLVNIANAGQIRSAEAILRLHKSNVTHVW CCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEE VNGERSLPELGLGRVASAPKPFIRKVTVERATTQMQAKELIVEAKDLIQKVLSDTFEGKA ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE VEVEPFEALADSMIESVLLDADALKCVSAMRSKDVYLLEHSINVAFLLVTFGRYLNFDAD EEECHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEECCCHHHHEEHHHHHCCCCHH MLRQIAIGGILHDIGKIKIDSKILNKPGKLTAEEFEHVKLHQTYAIEIMGQTKGLSQISK HHHHHHHHHHHHHHCCEEECHHHHCCCCCCCHHHHHHEEEEEEEEEEEEECCCCHHHHHH DISLMHHEKLDGCGYPLGLKGEQIPIHGRMSCIVDIFDALTATRCYKEAMSPASAFKILL HHHHHHHHCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GMTPTHLDQGLVYEFIRCIGVYPVGSLVQLSDGRIGIVWEAKGRDVLHPKVKCFYSVKHK CCCHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHH CYTQVEVVDLLRSPLNIEKGISPSSLEIDPTPFY HHHHHHHHHHHHCCCCHHCCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]