Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
---|---|
Accession | NC_010334 |
Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167622082
Identifier: 167622082
GI number: 167622082
Start: 156848
End: 157300
Strand: Reverse
Name: 167622082
Synonym: Shal_0141
Alternate gene names: NA
Gene position: 157300-156848 (Counterclockwise)
Preceding gene: 167622085
Following gene: 167622081
Centisome position: 3.01
GC content: 47.9
Gene sequence:
>453_bases ATGGCTTTATCCCGTAAGAAGTGGAATACCATCATCATCCTCGCATCTATTTTGATGATATCGGTGCTGACCGTCATTGA CGATAACAGTAAGATAACGCCACTGCAGACCCAAGCACTATTCGACAAGTCAGCACCATTGTCACAACTACAATATGGCG AGCTTTGGCTGCAGAAACGCCAGTCTGGCTGGCAATGCAGCGCTAGAGTGCTCAACTGTTTAGAGTGGGCTAATGCGTGG GATCAAGTGCATATTACAGCTCTAACCGATAAACCTGAGACTGAAGGTGAGCCTGTCGAACTGGTGATCCAAGTCGACGA TCTGGTTGATGCCCAGCTGTGGATTTTATTTAGTCAGCAAGGCCTGCTAAAGTCACCTGCGGGCAATTGGTACCAGATCC CTCCAAGCTTACGAGAAAGTTTAGCTCCCATTGTTCGCGCTCAAGCAAACTAA
Upstream 100 bases:
>100_bases AAATGACGGTACACCCACCGTTAGCATAATTTGTGGTTACATCAACTTGCAGATACACTTATCAGATACCCATATCAAAC AAAAAGCTGAAGTAACAATC
Downstream 100 bases:
>100_bases GCTCGTAATCTAAGGCTGTAATCCAAGGCAGTAAGCTAAGCCTGCCTTATAACGAAGCTGCAGCTATCACTAAGATAACC ATAAAAGAGAAAGCAAATGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 150; Mature: 149
Protein sequence:
>150_residues MALSRKKWNTIIILASILMISVLTVIDDNSKITPLQTQALFDKSAPLSQLQYGELWLQKRQSGWQCSARVLNCLEWANAW DQVHITALTDKPETEGEPVELVIQVDDLVDAQLWILFSQQGLLKSPAGNWYQIPPSLRESLAPIVRAQAN
Sequences:
>Translated_150_residues MALSRKKWNTIIILASILMISVLTVIDDNSKITPLQTQALFDKSAPLSQLQYGELWLQKRQSGWQCSARVLNCLEWANAW DQVHITALTDKPETEGEPVELVIQVDDLVDAQLWILFSQQGLLKSPAGNWYQIPPSLRESLAPIVRAQAN >Mature_149_residues ALSRKKWNTIIILASILMISVLTVIDDNSKITPLQTQALFDKSAPLSQLQYGELWLQKRQSGWQCSARVLNCLEWANAWD QVHITALTDKPETEGEPVELVIQVDDLVDAQLWILFSQQGLLKSPAGNWYQIPPSLRESLAPIVRAQAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16895; Mature: 16763
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALSRKKWNTIIILASILMISVLTVIDDNSKITPLQTQALFDKSAPLSQLQYGELWLQKR CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH QSGWQCSARVLNCLEWANAWDQVHITALTDKPETEGEPVELVIQVDDLVDAQLWILFSQQ CCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEECCC GLLKSPAGNWYQIPPSLRESLAPIVRAQAN CCCCCCCCCEEECCHHHHHHHHHHHHCCCC >Mature Secondary Structure ALSRKKWNTIIILASILMISVLTVIDDNSKITPLQTQALFDKSAPLSQLQYGELWLQKR CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH QSGWQCSARVLNCLEWANAWDQVHITALTDKPETEGEPVELVIQVDDLVDAQLWILFSQQ CCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEECCC GLLKSPAGNWYQIPPSLRESLAPIVRAQAN CCCCCCCCCEEECCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA