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The map label for this gene is dcyD [H]

Identifier: 167622020

GI number: 167622020

Start: 89748

End: 90767

Strand: Reverse

Name: dcyD [H]

Synonym: Shal_0079

Alternate gene names: 167622020

Gene position: 90767-89748 (Counterclockwise)

Preceding gene: 167622021

Following gene: 167622019

Centisome position: 1.74

GC content: 46.47

Gene sequence:

>1020_bases
ATGCTTACAGATAAATACCCAAAAGCTAAATTAGCTCATACACCAACACCTTTCGAATTTATGGCTAATATGACCAAGAA
ATTCGATGGTCCTAAATTATGGATTAAACGTGACGATGCGACAGGTTTAGCCATGGGTGGTAACAAGGCTCGTCAATTAG
AGTTTTATGTAGGTAAGGCACAAGCTGACGGCTGTAATGCCCTGCTTACTACTGGTGCAGTTCAATCTAACCACGTTCGT
ATGACGGTAGCTGCGGCACGTAAGATGGGCTGGCATGTTGAAGTACAGCTAGAGCACCGCGTCGATGGCAGACTACCTGA
ATATGAAAACAGCGGTAATCCATTCTTAGATAAGTTGATGGGTGCAAAAATCCATGTTTACCCAGAGGGTGAAGATGAGA
ACGGTGCCGATCAGGTGATGTATGACCGAGCCGACGAGCTAGTGACAGAAGGCTATAAGCCTTTCGTTATTCCGCTAGGT
GCTGTGGGTAAGACACCGTGGGGCGCACTCGGTTATGTAGATTGCGTTGAGGAGTTATTACTTCAAGCACAAGCGACCGG
TATGAAGATCGATGCCATCGTACTACCAACGGGTTCTGCAAACACTCACGCCGGTGTATTAGCAGGTTTGATCGCCCTAA
ACAGCGATATCCCAGTATACGGTTTCTGCGTTCGCCGTGACAAGGTGGCTCAGTTCGAGCGCGTATTAGTTAAAACTCGC
AAAGTGCTACAACTACTTGGTGTAGACGAGAATAAAGCCACTCACGACTTAGTTAAGTGTGAAGATTGGGTTCTAGGCCC
TGGATATGGCCAATTGACGACTGAAGTTCATGAAGCAATCGAGATTTTAGGTCATGAAGAAGGGATATTATTAGACCCTA
CCTACACAGCGAAGAGCATGGCCGGCATGATCGGCATGATCCGCGACGGTCAATTCACTAAAGATCAGAACGTCGTATTT
TTACATACAGGTGGTACACCAGCCCTATTCGGCTACCCTGAACTGATTGCCAATAAGTAA

Upstream 100 bases:

>100_bases
ACATATAAGTTACAAAATTAAAGTATAAAAACATAACCAAATACAAAAGCCATTCTTATAAATATTGATACAAGAATAAA
TTAATATAAAGGAATCAAAA

Downstream 100 bases:

>100_bases
AAACAAAATAAAAAAAACATGCCTGAGAGTTTTCTCAGGCATTTTGGCCAAACTTTATATTCCTCGTCCCAACAGGCTAC
CCCTGCAGCGATGACGAAGG

Product: 1-aminocyclopropane-1-carboxylate deaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MLTDKYPKAKLAHTPTPFEFMANMTKKFDGPKLWIKRDDATGLAMGGNKARQLEFYVGKAQADGCNALLTTGAVQSNHVR
MTVAAARKMGWHVEVQLEHRVDGRLPEYENSGNPFLDKLMGAKIHVYPEGEDENGADQVMYDRADELVTEGYKPFVIPLG
AVGKTPWGALGYVDCVEELLLQAQATGMKIDAIVLPTGSANTHAGVLAGLIALNSDIPVYGFCVRRDKVAQFERVLVKTR
KVLQLLGVDENKATHDLVKCEDWVLGPGYGQLTTEVHEAIEILGHEEGILLDPTYTAKSMAGMIGMIRDGQFTKDQNVVF
LHTGGTPALFGYPELIANK

Sequences:

>Translated_339_residues
MLTDKYPKAKLAHTPTPFEFMANMTKKFDGPKLWIKRDDATGLAMGGNKARQLEFYVGKAQADGCNALLTTGAVQSNHVR
MTVAAARKMGWHVEVQLEHRVDGRLPEYENSGNPFLDKLMGAKIHVYPEGEDENGADQVMYDRADELVTEGYKPFVIPLG
AVGKTPWGALGYVDCVEELLLQAQATGMKIDAIVLPTGSANTHAGVLAGLIALNSDIPVYGFCVRRDKVAQFERVLVKTR
KVLQLLGVDENKATHDLVKCEDWVLGPGYGQLTTEVHEAIEILGHEEGILLDPTYTAKSMAGMIGMIRDGQFTKDQNVVF
LHTGGTPALFGYPELIANK
>Mature_339_residues
MLTDKYPKAKLAHTPTPFEFMANMTKKFDGPKLWIKRDDATGLAMGGNKARQLEFYVGKAQADGCNALLTTGAVQSNHVR
MTVAAARKMGWHVEVQLEHRVDGRLPEYENSGNPFLDKLMGAKIHVYPEGEDENGADQVMYDRADELVTEGYKPFVIPLG
AVGKTPWGALGYVDCVEELLLQAQATGMKIDAIVLPTGSANTHAGVLAGLIALNSDIPVYGFCVRRDKVAQFERVLVKTR
KVLQLLGVDENKATHDLVKCEDWVLGPGYGQLTTEVHEAIEILGHEEGILLDPTYTAKSMAGMIGMIRDGQFTKDQNVVF
LHTGGTPALFGYPELIANK

Specific function: Catalyzes the alpha,beta-elimination reaction of D- cysteine and of several D-cysteine derivatives. It could be a defense mechanism against D-cysteine [H]

COG id: COG2515

COG function: function code E; 1-aminocyclopropane-1-carboxylate deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ACC deaminase/D-cysteine desulfhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082000, Length=328, Percent_Identity=36.890243902439, Blast_Score=210, Evalue=1e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005966
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.4.1.15 [H]

Molecular weight: Translated: 37101; Mature: 37101

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTDKYPKAKLAHTPTPFEFMANMTKKFDGPKLWIKRDDATGLAMGGNKARQLEFYVGKA
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCEEEEEEEECC
QADGCNALLTTGAVQSNHVRMTVAAARKMGWHVEVQLEHRVDGRLPEYENSGNPFLDKLM
CCCCCCEEEECCCCCCCCEEEEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHC
GAKIHVYPEGEDENGADQVMYDRADELVTEGYKPFVIPLGAVGKTPWGALGYVDCVEELL
CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
LQAQATGMKIDAIVLPTGSANTHAGVLAGLIALNSDIPVYGFCVRRDKVAQFERVLVKTR
HHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHH
KVLQLLGVDENKATHDLVKCEDWVLGPGYGQLTTEVHEAIEILGHEEGILLDPTYTAKSM
HHHHHHCCCCCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHH
AGMIGMIRDGQFTKDQNVVFLHTGGTPALFGYPELIANK
HHHHHEECCCCCCCCCCEEEEECCCCCCCCCCHHHHCCC
>Mature Secondary Structure
MLTDKYPKAKLAHTPTPFEFMANMTKKFDGPKLWIKRDDATGLAMGGNKARQLEFYVGKA
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCEEEEEEEECC
QADGCNALLTTGAVQSNHVRMTVAAARKMGWHVEVQLEHRVDGRLPEYENSGNPFLDKLM
CCCCCCEEEECCCCCCCCEEEEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHC
GAKIHVYPEGEDENGADQVMYDRADELVTEGYKPFVIPLGAVGKTPWGALGYVDCVEELL
CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
LQAQATGMKIDAIVLPTGSANTHAGVLAGLIALNSDIPVYGFCVRRDKVAQFERVLVKTR
HHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHH
KVLQLLGVDENKATHDLVKCEDWVLGPGYGQLTTEVHEAIEILGHEEGILLDPTYTAKSM
HHHHHHCCCCCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHH
AGMIGMIRDGQFTKDQNVVFLHTGGTPALFGYPELIANK
HHHHHEECCCCCCCCCCEEEEECCCCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA