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The map label for this gene is yfiK [H]

Identifier: 167040665

GI number: 167040665

Start: 2052620

End: 2053246

Strand: Reverse

Name: yfiK [H]

Synonym: Teth514_2042

Alternate gene names: 167040665

Gene position: 2053246-2052620 (Counterclockwise)

Preceding gene: 167040666

Following gene: 167040664

Centisome position: 83.56

GC content: 31.42

Gene sequence:

>627_bases
ATGATCAGATTGTTGGTGGCTGATGACCATGCTTTGATAAGAAAAGGGTTAGTCCAGCTTATTGAAATGGAAAAAGATAT
AAAAGTTATCTCTCAGGCTTCGAATGGGGAAGAGGCTTATAAACTTGCAAAGAAATTTATGCCTGATTTAATACTTATGG
ATGTGAATATGCCTGTGATGAATGGTATAAAGGCAGCAAAAATGTTAAAAGAAGAAAAACATCCAAGTAAAGTGTTGTTT
TTAACTATTTACAATGATAGGGAGTATCTTTTGGAAGCGCTTAAATTAGGAGTAGAAGGGTACATATTAAAGGATGCGGA
ATATGACGATTTAATAAAAGCAATAAAGACTATTTACAATGGAGGAGTTTATATTCATCCTTCTTTAATGGAAGAAATAG
ATAACATAGATCAGGAAACCTTGAAAAAAGACCTAACACCAAGGGAAATAGAAATTCTCAAACTTATTTCTAAAGGGTAT
AGCAATAAAGAAATTGCACAAAAACTATTTTTAAGCGAGAAAACTGTCAAGAACCATGTTTACAATATTTTTAAAAAATT
AGATGTGAAGGACAGAACTCAAGCTGCTATTTATATGCTTAAAAATGAGACGATTTTACAGAACTAA

Upstream 100 bases:

>100_bases
AGGGAAAGAATAGAAATTTTAAACGGTAAATTTGAAATAAGCAGTTTTAAAAATAATGGTACTCAAATTTATATTTCTAT
ACCTGTAAGGGGTGTTGAGG

Downstream 100 bases:

>100_bases
TTATTTTTAAGGTTAAATTTGACTTTTATACAAAAAAAGCGTATCATATTGTTGATATACAGTGTCATTCATACAAAAAA
CCACGGGGGGTAATTTCATT

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MIRLLVADDHALIRKGLVQLIEMEKDIKVISQASNGEEAYKLAKKFMPDLILMDVNMPVMNGIKAAKMLKEEKHPSKVLF
LTIYNDREYLLEALKLGVEGYILKDAEYDDLIKAIKTIYNGGVYIHPSLMEEIDNIDQETLKKDLTPREIEILKLISKGY
SNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNETILQN

Sequences:

>Translated_208_residues
MIRLLVADDHALIRKGLVQLIEMEKDIKVISQASNGEEAYKLAKKFMPDLILMDVNMPVMNGIKAAKMLKEEKHPSKVLF
LTIYNDREYLLEALKLGVEGYILKDAEYDDLIKAIKTIYNGGVYIHPSLMEEIDNIDQETLKKDLTPREIEILKLISKGY
SNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNETILQN
>Mature_208_residues
MIRLLVADDHALIRKGLVQLIEMEKDIKVISQASNGEEAYKLAKKFMPDLILMDVNMPVMNGIKAAKMLKEEKHPSKVLF
LTIYNDREYLLEALKLGVEGYILKDAEYDDLIKAIKTIYNGGVYIHPSLMEEIDNIDQETLKKDLTPREIEILKLISKGY
SNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNETILQN

Specific function: Member of the two-component regulatory system yfiJ/yfiK [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787473, Length=202, Percent_Identity=40.5940594059406, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788222, Length=194, Percent_Identity=32.4742268041237, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1788521, Length=203, Percent_Identity=31.0344827586207, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1790102, Length=202, Percent_Identity=28.7128712871287, Blast_Score=104, Evalue=3e-24,
Organism=Escherichia coli, GI1788712, Length=187, Percent_Identity=27.2727272727273, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1786747, Length=187, Percent_Identity=28.8770053475936, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1788546, Length=194, Percent_Identity=26.2886597938144, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787277, Length=54, Percent_Identity=59.2592592592593, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788550, Length=109, Percent_Identity=33.0275229357798, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082052, Length=104, Percent_Identity=31.7307692307692, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789937, Length=123, Percent_Identity=30.8943089430894, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23988; Mature: 23988

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLLVADDHALIRKGLVQLIEMEKDIKVISQASNGEEAYKLAKKFMPDLILMDVNMPVM
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCHHH
NGIKAAKMLKEEKHPSKVLFLTIYNDREYLLEALKLGVEGYILKDAEYDDLIKAIKTIYN
HHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHC
GGVYIHPSLMEEIDNIDQETLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHV
CCEEECHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
YNIFKKLDVKDRTQAAIYMLKNETILQN
HHHHHHCCCCCCHHHHHEEEECCHHCCC
>Mature Secondary Structure
MIRLLVADDHALIRKGLVQLIEMEKDIKVISQASNGEEAYKLAKKFMPDLILMDVNMPVM
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCHHH
NGIKAAKMLKEEKHPSKVLFLTIYNDREYLLEALKLGVEGYILKDAEYDDLIKAIKTIYN
HHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHC
GGVYIHPSLMEEIDNIDQETLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHV
CCEEECHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
YNIFKKLDVKDRTQAAIYMLKNETILQN
HHHHHHCCCCCCHHHHHEEEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]