Click here to switch to the map view.

The map label for this gene is ymfH [H]

Identifier: 167040642

GI number: 167040642

Start: 2028587

End: 2029864

Strand: Reverse

Name: ymfH [H]

Synonym: Teth514_2019

Alternate gene names: 167040642

Gene position: 2029864-2028587 (Counterclockwise)

Preceding gene: 167040643

Following gene: 167040641

Centisome position: 82.61

GC content: 30.59

Gene sequence:

>1278_bases
ATGCAGCAGTTGTACAATGAGAGAATAGACGAAAAAATGCTTTTACAAGAATTGGATAATGGCCTAAAAGTGTATATAAT
GCCGAAAAGAGGTTATACAAAGCAGTTTGCAATATTTGCTACCCATTTTGGTTCTAATGACAGTAAGTTTATCGCTCCAG
GGGATACTGATGTAACGGAGGTACCTGATGGGGTTGCACATTTTTTGGAACACAAAATGTTCGAAGAGGAAGAAGGTAGT
ATTTTTGAGCAGTTTTCAAAATTAGGGGCTTCAGCTAACGCTTACACTAATTTTACTACAACTGCTTATTTATTTGCGAG
TACTGAAAACTTCTATGAAAATCTAAAACTTTTAGTAAAGTTTGTACAAAATCCTTATTTTACAGATGAAAATGTGGAAA
AAGAAAAGGGAATAATAGCTCAAGAAATAAGGATGTATCAAGATGACCCCAATTGGAAAGTTTATTTTAACGCATTAGAG
GCTCTTTATCATGTACATCCAGTTAGAAAGGACATAGCTGGCACAATTGAATCAATTTCTCAGATAAATAAAGAAATTTT
ATATAAGTGTTATTACACATTTTATCATCCTGAAAATATGGTATTGTTTGCGGTAGGAGACATTGATATAGATAAAACTC
TTGACATTATAAAAGAAAATATGAGACAAGATAAAAAACAAGGAAAAATAAAAAGGATATATCCTAAAGAGCCTTTAAGC
GTTTATAAAAAAGAAGTTGTACAAGATATGCAAGTATCCATTCCTCTTTTTAATCTAGGTTTTAAAGATACAGATGTGGG
TTTTGGGGGAAAGAAATTATTAAAGAAAAATTTAGAGATACAAATAGGTTTGGAAATGGCATTAGGCAGAAGTTCTGACT
TGTATGAGAGGCTTTACAATGAAGGGCTTATTGACAGCACTTTTAGCTTTGATTACGGTGGAGAGATAGATTACGGTTAT
TCTATAATAGGAGGTCAATCTAAAGATCCTTTTAAAGTGAGAGATATCATTTTAAATGCAATAAATAATCTACAATTTTT
AAAGGAAGAAGATTTTGAGAGAATAAAGAAAAAATACATAGGAAAATTTTTAAGAACATTTAATTCGGTCGATAGTATAG
CTTACAGTTTTATAAACTTTTATATGAAAGAAATAAATTTACTGGATTATTTAGATGTGCTTTACAGTATAAGCTTTGAA
GATGTTAGAGAAAGATTTCAAAATCATCTGAGAGAAGAGAATAGTGTACTTTCCGTTGTGAATCCTATAAAAAAATAA

Upstream 100 bases:

>100_bases
AAAAAGTAGAAAAGGTGACAAAAGAGGACGTAGTGGAAGTTGCTAAAAAGGTTAAATTAGATACGGTGTATTTTATGACC
GGCAAAAAGGAGGAATAATT

Downstream 100 bases:

>100_bases
AAAAATCAGGCGCAAAGCCTGATTTTTTTATTTTTTTATAAAAATTTAGCAGGATTTTTTAAATTTATATAGAATAACAT
ATTAAGTGGTGTAATGTGGT

Product: peptidase M16 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MQQLYNERIDEKMLLQELDNGLKVYIMPKRGYTKQFAIFATHFGSNDSKFIAPGDTDVTEVPDGVAHFLEHKMFEEEEGS
IFEQFSKLGASANAYTNFTTTAYLFASTENFYENLKLLVKFVQNPYFTDENVEKEKGIIAQEIRMYQDDPNWKVYFNALE
ALYHVHPVRKDIAGTIESISQINKEILYKCYYTFYHPENMVLFAVGDIDIDKTLDIIKENMRQDKKQGKIKRIYPKEPLS
VYKKEVVQDMQVSIPLFNLGFKDTDVGFGGKKLLKKNLEIQIGLEMALGRSSDLYERLYNEGLIDSTFSFDYGGEIDYGY
SIIGGQSKDPFKVRDIILNAINNLQFLKEEDFERIKKKYIGKFLRTFNSVDSIAYSFINFYMKEINLLDYLDVLYSISFE
DVRERFQNHLREENSVLSVVNPIKK

Sequences:

>Translated_425_residues
MQQLYNERIDEKMLLQELDNGLKVYIMPKRGYTKQFAIFATHFGSNDSKFIAPGDTDVTEVPDGVAHFLEHKMFEEEEGS
IFEQFSKLGASANAYTNFTTTAYLFASTENFYENLKLLVKFVQNPYFTDENVEKEKGIIAQEIRMYQDDPNWKVYFNALE
ALYHVHPVRKDIAGTIESISQINKEILYKCYYTFYHPENMVLFAVGDIDIDKTLDIIKENMRQDKKQGKIKRIYPKEPLS
VYKKEVVQDMQVSIPLFNLGFKDTDVGFGGKKLLKKNLEIQIGLEMALGRSSDLYERLYNEGLIDSTFSFDYGGEIDYGY
SIIGGQSKDPFKVRDIILNAINNLQFLKEEDFERIKKKYIGKFLRTFNSVDSIAYSFINFYMKEINLLDYLDVLYSISFE
DVRERFQNHLREENSVLSVVNPIKK
>Mature_425_residues
MQQLYNERIDEKMLLQELDNGLKVYIMPKRGYTKQFAIFATHFGSNDSKFIAPGDTDVTEVPDGVAHFLEHKMFEEEEGS
IFEQFSKLGASANAYTNFTTTAYLFASTENFYENLKLLVKFVQNPYFTDENVEKEKGIIAQEIRMYQDDPNWKVYFNALE
ALYHVHPVRKDIAGTIESISQINKEILYKCYYTFYHPENMVLFAVGDIDIDKTLDIIKENMRQDKKQGKIKRIYPKEPLS
VYKKEVVQDMQVSIPLFNLGFKDTDVGFGGKKLLKKNLEIQIGLEMALGRSSDLYERLYNEGLIDSTFSFDYGGEIDYGY
SIIGGQSKDPFKVRDIILNAINNLQFLKEEDFERIKKKYIGKFLRTFNSVDSIAYSFINFYMKEINLLDYLDVLYSISFE
DVRERFQNHLREENSVLSVVNPIKK

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Homo sapiens, GI46593007, Length=211, Percent_Identity=28.436018957346, Blast_Score=70, Evalue=4e-12,
Organism=Escherichia coli, GI1787770, Length=241, Percent_Identity=26.1410788381743, Blast_Score=86, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI71999683, Length=212, Percent_Identity=28.3018867924528, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: 3.4.99.- [C]

Molecular weight: Translated: 49557; Mature: 49557

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQLYNERIDEKMLLQELDNGLKVYIMPKRGYTKQFAIFATHFGSNDSKFIAPGDTDVTE
CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEECCCCCEEECCCCCCHHH
VPDGVAHFLEHKMFEEEEGSIFEQFSKLGASANAYTNFTTTAYLFASTENFYENLKLLVK
CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHH
FVQNPYFTDENVEKEKGIIAQEIRMYQDDPNWKVYFNALEALYHVHPVRKDIAGTIESIS
HHHCCCCCCCCCCHHHCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
QINKEILYKCYYTFYHPENMVLFAVGDIDIDKTLDIIKENMRQDKKQGKIKRIYPKEPLS
HHHHHHHHHHHHEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCHHH
VYKKEVVQDMQVSIPLFNLGFKDTDVGFGGKKLLKKNLEIQIGLEMALGRSSDLYERLYN
HHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHCCCCHHHHHHHHC
EGLIDSTFSFDYGGEIDYGYSIIGGQSKDPFKVRDIILNAINNLQFLKEEDFERIKKKYI
CCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GKFLRTFNSVDSIAYSFINFYMKEINLLDYLDVLYSISFEDVRERFQNHLREENSVLSVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHH
NPIKK
HHCCC
>Mature Secondary Structure
MQQLYNERIDEKMLLQELDNGLKVYIMPKRGYTKQFAIFATHFGSNDSKFIAPGDTDVTE
CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEECCCCCEEECCCCCCHHH
VPDGVAHFLEHKMFEEEEGSIFEQFSKLGASANAYTNFTTTAYLFASTENFYENLKLLVK
CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHH
FVQNPYFTDENVEKEKGIIAQEIRMYQDDPNWKVYFNALEALYHVHPVRKDIAGTIESIS
HHHCCCCCCCCCCHHHCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
QINKEILYKCYYTFYHPENMVLFAVGDIDIDKTLDIIKENMRQDKKQGKIKRIYPKEPLS
HHHHHHHHHHHHEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCHHH
VYKKEVVQDMQVSIPLFNLGFKDTDVGFGGKKLLKKNLEIQIGLEMALGRSSDLYERLYN
HHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHCCCCHHHHHHHHC
EGLIDSTFSFDYGGEIDYGYSIIGGQSKDPFKVRDIILNAINNLQFLKEEDFERIKKKYI
CCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GKFLRTFNSVDSIAYSFINFYMKEINLLDYLDVLYSISFEDVRERFQNHLREENSVLSVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHH
NPIKK
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]