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The map label for this gene is yqxC [H]

Identifier: 167040179

GI number: 167040179

Start: 1564320

End: 1565120

Strand: Direct

Name: yqxC [H]

Synonym: Teth514_1541

Alternate gene names: 167040179

Gene position: 1564320-1565120 (Clockwise)

Preceding gene: 167040178

Following gene: 167040180

Centisome position: 63.66

GC content: 32.58

Gene sequence:

>801_bases
ATGGCTTCAAAAAAAGAAAGATTGGATGTTTTGCTTGTTCAAAAAGGTTTTTTCTCCTCAAGAGAAAAAGCAAAAGCTTC
TATTATGGCAGGAGAAGTATATGTTGATGGCAAGAAAATTGAAAAAGCTGGAGAGTTTGTCAACATAGATTCTTCAATTG
AAATAAAAATTAATTCTTTACCTTATGTAAGTAGGGGTGGGCTAAAGTTACAAAAAGCAATAGAAACTTTTAATATTAAT
GTGACTGGCAAGATTGCGTTAGATATTGGAGCTTCTACAGGAGGTTTTACTGATTGCCTTTTAAAACATGGTGTTATAAA
AGTATATGCTGTAGATGTAGGATACGGGCAATTGGATTGGAGTTTAAGAAATGACCCTCGGGTCATAAACATGGAAAAAA
CTAATATAAGATTTTTAGAAACATTGCCTGAAACAGTGGACATGGTGACAATAGACGTTTCTTTTATTTCACTTGAACTT
GTTATACCTTCTGCAGATAAATTTTTAAAACCAGAGGGAGATTTGATAGCTTTAATAAAACCTCAATTTGAAGCAGGAAG
AGAGAAAGTAGGTAAAAAAGGCGTGGTGAGAGACCCGGCTGTTCATAGGGAAGTGATTGAAAAAATTGTGACTTTGTTTC
AAAAGTTTAACTACGGTATAATAGGTATTACCTATTCTCCTATAAAAGGGGCAGAAGGCAATATAGAGTATTTAATCTAT
AGCAAAAAGTGGATCGAAAATCAACACAATATTGATATTACAAAAATTGTAGAAGAGGCATTTAAAAATTTGAACAAATA
A

Upstream 100 bases:

>100_bases
TTGAACACGGAGATGTGGAAAACTTGTTTAAAAAATACAATTTAGATGCTGAGTCTATCGCAAATACTATACTACAAAAA
TATAAGGAAATGAGGTAAAT

Downstream 100 bases:

>100_bases
AATATTAGCAGGAAAATTTGTTTTTTTGTAGAATATGATAAATGTGGTGAGATTGTAATGAAAAAAGTCGGAGTAATTCC
AAATATCAATAAAGATAAAG

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MASKKERLDVLLVQKGFFSSREKAKASIMAGEVYVDGKKIEKAGEFVNIDSSIEIKINSLPYVSRGGLKLQKAIETFNIN
VTGKIALDIGASTGGFTDCLLKHGVIKVYAVDVGYGQLDWSLRNDPRVINMEKTNIRFLETLPETVDMVTIDVSFISLEL
VIPSADKFLKPEGDLIALIKPQFEAGREKVGKKGVVRDPAVHREVIEKIVTLFQKFNYGIIGITYSPIKGAEGNIEYLIY
SKKWIENQHNIDITKIVEEAFKNLNK

Sequences:

>Translated_266_residues
MASKKERLDVLLVQKGFFSSREKAKASIMAGEVYVDGKKIEKAGEFVNIDSSIEIKINSLPYVSRGGLKLQKAIETFNIN
VTGKIALDIGASTGGFTDCLLKHGVIKVYAVDVGYGQLDWSLRNDPRVINMEKTNIRFLETLPETVDMVTIDVSFISLEL
VIPSADKFLKPEGDLIALIKPQFEAGREKVGKKGVVRDPAVHREVIEKIVTLFQKFNYGIIGITYSPIKGAEGNIEYLIY
SKKWIENQHNIDITKIVEEAFKNLNK
>Mature_265_residues
ASKKERLDVLLVQKGFFSSREKAKASIMAGEVYVDGKKIEKAGEFVNIDSSIEIKINSLPYVSRGGLKLQKAIETFNINV
TGKIALDIGASTGGFTDCLLKHGVIKVYAVDVGYGQLDWSLRNDPRVINMEKTNIRFLETLPETVDMVTIDVSFISLELV
IPSADKFLKPEGDLIALIKPQFEAGREKVGKKGVVRDPAVHREVIEKIVTLFQKFNYGIIGITYSPIKGAEGNIEYLIYS
KKWIENQHNIDITKIVEEAFKNLNK

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29710; Mature: 29579

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKKERLDVLLVQKGFFSSREKAKASIMAGEVYVDGKKIEKAGEFVNIDSSIEIKINSL
CCCCHHHCEEEEEECCCCCCHHHHHHEEEEEEEEECCHHHHCCCCEEECCCEEEEEECCC
PYVSRGGLKLQKAIETFNINVTGKIALDIGASTGGFTDCLLKHGVIKVYAVDVGYGQLDW
CEECCCCCCCEEEHHEEEEEEEEEEEEEECCCCCCHHHHHHHCCEEEEEEEEECCCEEEE
SLRNDPRVINMEKTNIRFLETLPETVDMVTIDVSFISLELVIPSADKFLKPEGDLIALIK
EECCCCEEEEEECCCEEEEHHCCCCEEEEEEEEEEEEEEEEECCCHHHCCCCCCEEEEEC
PQFEAGREKVGKKGVVRDPAVHREVIEKIVTLFQKFNYGIIGITYSPIKGAEGNIEYLIY
CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEE
SKKWIENQHNIDITKIVEEAFKNLNK
EHHHCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASKKERLDVLLVQKGFFSSREKAKASIMAGEVYVDGKKIEKAGEFVNIDSSIEIKINSL
CCCHHHCEEEEEECCCCCCHHHHHHEEEEEEEEECCHHHHCCCCEEECCCEEEEEECCC
PYVSRGGLKLQKAIETFNINVTGKIALDIGASTGGFTDCLLKHGVIKVYAVDVGYGQLDW
CEECCCCCCCEEEHHEEEEEEEEEEEEEECCCCCCHHHHHHHCCEEEEEEEEECCCEEEE
SLRNDPRVINMEKTNIRFLETLPETVDMVTIDVSFISLELVIPSADKFLKPEGDLIALIK
EECCCCEEEEEECCCEEEEHHCCCCEEEEEEEEEEEEEEEEECCCHHHCCCCCCEEEEEC
PQFEAGREKVGKKGVVRDPAVHREVIEKIVTLFQKFNYGIIGITYSPIKGAEGNIEYLIY
CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEE
SKKWIENQHNIDITKIVEEAFKNLNK
EHHHCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]