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The map label for this gene is yibK [C]

Identifier: 167038864

GI number: 167038864

Start: 195623

End: 196093

Strand: Direct

Name: yibK [C]

Synonym: Teth514_0194

Alternate gene names: 167038864

Gene position: 195623-196093 (Clockwise)

Preceding gene: 167038858

Following gene: 167038865

Centisome position: 7.96

GC content: 36.09

Gene sequence:

>471_bases
ATGCCACTTAATGTAGTACTTGTTGAACCTGAGATACCACAGAACACGGGGAATATTGCAAGGACTTGTGTACTTACGGG
CAGCAGGCTTCATCTTGTAAAACCTTTAGGTTTCAGTATAGACGAAAAATACGTAAAAAGAGCTGGCTTAGATTACTGGC
CTCTTTTAGACCTTACTGTTTACGATAATCTCGAACAATTTCTTGAACAAAACAAAGGGAAAAAGTTTTATCTTGCTACC
ACAAAGGCTAGAAAATATTATCATGATGTGAAATATGAAGACAATTCTTATATACTTTTTGGGAAAGAAACTGCAGGACT
TCCTAAGTGGTTGATTGAAAAATACTACGAGGATTGTATACGGATACCAATGCATGAAGTGATATCTACAAGGTCTTTAA
ATTTGTCCAACTCTGTAGCTATAGTACTGTATGAGGCCTTGAGACAACTGGGTTTTCCTAATATGAAATAA

Upstream 100 bases:

>100_bases
TTAATAAGTGAGATGAGTGTAAAAATTTTTCACTCTTTTTTAATTATAAAGCTCTTGTGATATAATAAAATAAAGTTAGT
TACAATACAGGAGGTAGAGT

Downstream 100 bases:

>100_bases
AAAAATTGAGGGATGATTATGAAACGAAAGATTATTCATGTTGATATGGATGCTTTTTTTGCATCTGTAGAACAACATGA
TAATCCGGAATACAAAGGGA

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MPLNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVYDNLEQFLEQNKGKKFYLAT
TKARKYYHDVKYEDNSYILFGKETAGLPKWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK

Sequences:

>Translated_156_residues
MPLNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVYDNLEQFLEQNKGKKFYLAT
TKARKYYHDVKYEDNSYILFGKETAGLPKWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK
>Mature_155_residues
PLNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVYDNLEQFLEQNKGKKFYLATT
KARKYYHDVKYEDNSYILFGKETAGLPKWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK

Specific function: Could methylate the ribose at the nucleotide 34 wobble position in tRNA [H]

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family. TrmL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790034, Length=153, Percent_Identity=47.7124183006536, Blast_Score=148, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004440
- InterPro:   IPR016914
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 18092; Mature: 17961

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTV
CCCEEEEECCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCHHHHHHCCCCCCCEEHHHH
YDNLEQFLEQNKGKKFYLATTKARKYYHDVKYEDNSYILFGKETAGLPKWLIEKYYEDCI
HHHHHHHHHHCCCCEEEEEEHHHHHHHHCCEECCCCEEEEECCCCCCHHHHHHHHHHHHH
RIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK
HCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PLNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTV
CCEEEEECCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCHHHHHHCCCCCCCEEHHHH
YDNLEQFLEQNKGKKFYLATTKARKYYHDVKYEDNSYILFGKETAGLPKWLIEKYYEDCI
HHHHHHHHHHCCCCEEEEEEHHHHHHHHCCEECCCCEEEEECCCCCCHHHHHHHHHHHHH
RIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK
HCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]