Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16520023
GI number: 16520023
Start: 101570
End: 103087
Strand: Reverse
Name: Not Available
Synonym: NGR_a00820
Alternate gene names: NA
Gene position: 103087-101570 (Counterclockwise)
Preceding gene: 16520022
Following gene: 16520025
Centisome position: 19.23
GC content: 56.13
Gene sequence:
>1518_bases GTGATGCTGGATCTGACGAATGCGAAGCGCATAGGAATCATCGGCGGCGGCATTGTCGGTTGGCTTGCAGCGATAGCGCT TCGCCGTGTTTTCGACGTTGATGTCGATGTAACGGTCATAGAGGCTCCGACGGTGTTTCCGCTTGGCCCAGGGGAGGGGG GCTCGCTCAACCTGATTGACACGTTGTGTCGCAATGAGCTCGACCTGGACGTTTTCATTGGTGAAGCCGGCGCCACCCAC AAGCTTGGTGTGCTCTATGAAAATTGGAGGGGTGGAGGAATCCCGGATCGCTACTACCGCATGTTCGGCGGATCGGGCAT ACCGGAAATCGAATGTCGCGTCGGCGGTTTCTTCCCTCTGCTGTCGGCGAGAATTGCCGCAGGTGAGAACCTTCACACGT GCATCCCTGGCTTTGAGTTAATCACAAAGAAGGCATCGCAAGTGGAAATCGACGAGTTGCTGGCAACCGGTGAGTCTGGA CTCTACCCTTCGTTTCACTTCAATCACGCCGGCTTCGAGCGATACCTAAGGCGCGTCGGGCTGGCACGTGGGATCACTTC TCGTAGGGCTGTGGTACACGGGATGAGACTCGACGACCGAGGGCATGTAAACGCTTTCCAGCTCGGAGGCGAAGAACTTG AAGTCGACTTCGCCGTCGATGCGTCCGGATTTGCCAGATTGGGTCTCGGCAAAGTCTTTAATACGCGCTGGTGTTCGTTC GCAAATGTGCTGCCTACTGATCGTGCGATCATCTTTGAGCTTGAGCCGCGGGGATCATCCCCCGTTACCCGTGCCACCGC CATGAAAGCCGGATGGATGTGGGAAGCCCCATTGAATCGCTCGATCAGTGCCGGTTATGCATTCAGCAGCAGATATGCGG ACGCTGCGATGGCAATCGCCGAGGTTGAGAATCACTATGGATTCCGTGTGGAGGCGAAACACGAGCTTTCGCTGGATCAA GGTTACTTTTCGACCGCATGGGTTAACAATTTCGTGGCTTTGGGAACAGCGTCGGGTTTTGTTGAGCCCCTGGAGGCTGC ACTTGCCGCCCACACCTTCGAAGCGTTAAGGAATTTGGAGCGCATTCTCGCCAACGGAAGCGGCATTGTGCCCGCTCGGG CCATCGAAGGCTATAACAGCGCAAACGCACGGTGCTGGACGGGTGTTCGGGACTTCCTGAGGCTGCACTACGATTCCAAG CGAATTGACACACCGTTTTGGCGAGATCTTGCCGCAGCCGAGTTGCCGGAAGGATATGCCAACCTGAGGGCTTGCTTCCA AAAACGGACACCACGCTTTATCGATATCCAACCGTATGTCGGAAGCGGATGGCAGAGCCTCTTCCACGAAATTGATTGGA TTTCAGTGGCGGTCCCTCTAGGAGTAGTGCCGCAGGCGGCCGCATGCGCCGAACTACGCAGGCTCTCTACGGAAAGTCGA AGTGAGGTCCAGGCCTATGTTGATCGGCTGAAGGGAACAATAGCCAAGATCAGCAGCACGAGGGGATACATGCACTAA
Upstream 100 bases:
>100_bases TGGGGAATGCTACCGCTTCAGATGGTCCTACATTGAATCTTACTGTGGGTTCTCCCTACAGATGCGCCACCTTTTAACAT AATCTTGACGATAGTGAAAA
Downstream 100 bases:
>100_bases TCGTCACACAAAAGCCACTCCGCGGCCGAAGCCGTGTACCAGGGTCTTGCTTCATGATCATGGCGGAGCGGCACATTGAT CGTGAGCAGGGTGTCTCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 505; Mature: 505
Protein sequence:
>505_residues MMLDLTNAKRIGIIGGGIVGWLAAIALRRVFDVDVDVTVIEAPTVFPLGPGEGGSLNLIDTLCRNELDLDVFIGEAGATH KLGVLYENWRGGGIPDRYYRMFGGSGIPEIECRVGGFFPLLSARIAAGENLHTCIPGFELITKKASQVEIDELLATGESG LYPSFHFNHAGFERYLRRVGLARGITSRRAVVHGMRLDDRGHVNAFQLGGEELEVDFAVDASGFARLGLGKVFNTRWCSF ANVLPTDRAIIFELEPRGSSPVTRATAMKAGWMWEAPLNRSISAGYAFSSRYADAAMAIAEVENHYGFRVEAKHELSLDQ GYFSTAWVNNFVALGTASGFVEPLEAALAAHTFEALRNLERILANGSGIVPARAIEGYNSANARCWTGVRDFLRLHYDSK RIDTPFWRDLAAAELPEGYANLRACFQKRTPRFIDIQPYVGSGWQSLFHEIDWISVAVPLGVVPQAAACAELRRLSTESR SEVQAYVDRLKGTIAKISSTRGYMH
Sequences:
>Translated_505_residues MMLDLTNAKRIGIIGGGIVGWLAAIALRRVFDVDVDVTVIEAPTVFPLGPGEGGSLNLIDTLCRNELDLDVFIGEAGATH KLGVLYENWRGGGIPDRYYRMFGGSGIPEIECRVGGFFPLLSARIAAGENLHTCIPGFELITKKASQVEIDELLATGESG LYPSFHFNHAGFERYLRRVGLARGITSRRAVVHGMRLDDRGHVNAFQLGGEELEVDFAVDASGFARLGLGKVFNTRWCSF ANVLPTDRAIIFELEPRGSSPVTRATAMKAGWMWEAPLNRSISAGYAFSSRYADAAMAIAEVENHYGFRVEAKHELSLDQ GYFSTAWVNNFVALGTASGFVEPLEAALAAHTFEALRNLERILANGSGIVPARAIEGYNSANARCWTGVRDFLRLHYDSK RIDTPFWRDLAAAELPEGYANLRACFQKRTPRFIDIQPYVGSGWQSLFHEIDWISVAVPLGVVPQAAACAELRRLSTESR SEVQAYVDRLKGTIAKISSTRGYMH >Mature_505_residues MMLDLTNAKRIGIIGGGIVGWLAAIALRRVFDVDVDVTVIEAPTVFPLGPGEGGSLNLIDTLCRNELDLDVFIGEAGATH KLGVLYENWRGGGIPDRYYRMFGGSGIPEIECRVGGFFPLLSARIAAGENLHTCIPGFELITKKASQVEIDELLATGESG LYPSFHFNHAGFERYLRRVGLARGITSRRAVVHGMRLDDRGHVNAFQLGGEELEVDFAVDASGFARLGLGKVFNTRWCSF ANVLPTDRAIIFELEPRGSSPVTRATAMKAGWMWEAPLNRSISAGYAFSSRYADAAMAIAEVENHYGFRVEAKHELSLDQ GYFSTAWVNNFVALGTASGFVEPLEAALAAHTFEALRNLERILANGSGIVPARAIEGYNSANARCWTGVRDFLRLHYDSK RIDTPFWRDLAAAELPEGYANLRACFQKRTPRFIDIQPYVGSGWQSLFHEIDWISVAVPLGVVPQAAACAELRRLSTESR SEVQAYVDRLKGTIAKISSTRGYMH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4XG_RHISN (P55699)
Other databases:
- EMBL: U00090 - PIR: T10835 - RefSeq: NP_444143.1 - ProteinModelPortal: P55699 - SMR: P55699 - GeneID: 962507 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a00820 - InterPro: IPR006905
Pfam domain/function: PF04820 Trp_halogenase
EC number: NA
Molecular weight: Translated: 55457; Mature: 55457
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0xb36cc9c)-;
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLDLTNAKRIGIIGGGIVGWLAAIALRRVFDVDVDVTVIEAPTVFPLGPGEGGSLNLID CEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCCCHHHH TLCRNELDLDVFIGEAGATHKLGVLYENWRGGGIPDRYYRMFGGSGIPEIECRVGGFFPL HHHCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCEEEEECCCHHHH LSARIAAGENLHTCIPGFELITKKASQVEIDELLATGESGLYPSFHFNHAGFERYLRRVG HHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH LARGITSRRAVVHGMRLDDRGHVNAFQLGGEELEVDFAVDASGFARLGLGKVFNTRWCSF HHHCCHHHHHHHCCCEECCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH ANVLPTDRAIIFELEPRGSSPVTRATAMKAGWMWEAPLNRSISAGYAFSSRYADAAMAIA HCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHH EVENHYGFRVEAKHELSLDQGYFSTAWVNNFVALGTASGFVEPLEAALAAHTFEALRNLE HHHHCCCEEEEECCCCCCCCCCCHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH RILANGSGIVPARAIEGYNSANARCWTGVRDFLRLHYDSKRIDTPFWRDLAAAELPEGYA HHHHCCCCCCCHHHHCCCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHH NLRACFQKRTPRFIDIQPYVGSGWQSLFHEIDWISVAVPLGVVPQAAACAELRRLSTESR HHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCHHEEEECCCCCCCHHHHHHHHHHCCCHH SEVQAYVDRLKGTIAKISSTRGYMH HHHHHHHHHHHHHHHHHHCCCCCCH >Mature Secondary Structure MMLDLTNAKRIGIIGGGIVGWLAAIALRRVFDVDVDVTVIEAPTVFPLGPGEGGSLNLID CEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCCCHHHH TLCRNELDLDVFIGEAGATHKLGVLYENWRGGGIPDRYYRMFGGSGIPEIECRVGGFFPL HHHCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCEEEEECCCHHHH LSARIAAGENLHTCIPGFELITKKASQVEIDELLATGESGLYPSFHFNHAGFERYLRRVG HHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH LARGITSRRAVVHGMRLDDRGHVNAFQLGGEELEVDFAVDASGFARLGLGKVFNTRWCSF HHHCCHHHHHHHCCCEECCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH ANVLPTDRAIIFELEPRGSSPVTRATAMKAGWMWEAPLNRSISAGYAFSSRYADAAMAIA HCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHH EVENHYGFRVEAKHELSLDQGYFSTAWVNNFVALGTASGFVEPLEAALAAHTFEALRNLE HHHHCCCEEEEECCCCCCCCCCCHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH RILANGSGIVPARAIEGYNSANARCWTGVRDFLRLHYDSKRIDTPFWRDLAAAELPEGYA HHHHCCCCCCCHHHHCCCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHH NLRACFQKRTPRFIDIQPYVGSGWQSLFHEIDWISVAVPLGVVPQAAACAELRRLSTESR HHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCHHEEEECCCCCCCHHHHHHHHHHCCCHH SEVQAYVDRLKGTIAKISSTRGYMH HHHHHHHHHHHHHHHHHHCCCCCCH
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424