Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 16519943

GI number: 16519943

Start: 197927

End: 198307

Strand: Direct

Name: Not Available

Synonym: NGR_a01620

Alternate gene names: 16519943

Gene position: 197927-198307 (Clockwise)

Preceding gene: 16519944

Following gene: 16519942

Centisome position: 36.92

GC content: 59.32

Gene sequence:

>381_bases
TTGATCGAACCCATTTCTACAAACGATGCCCCCGGCGCGGTCGGCCCCTACTCCCAGGCCATCAAGGTTGGCGATCTGCT
TTTCGTCTCCGGGCAGTTGCCAATCGATCCGGCCACCGGGGAGTTCAATTCGGCCAATGCTGTCGAACAGGCCGAACAAT
GCCTCAAGAACCTTCAGGCGATCGCCAGGGCCGCCGGCACGGATCTGTCGAAGACGGTCAAGACGACAGTGCTGCTCACC
GACCTTGGCGACTTCGCGGACATCAATCGCGTTTACACGGGCTTCTTCTCCACCCCCTACCCGGCGCGCGCCTGCTATGA
AGTCAAGGCGCTGCCAAAAGGTGCCAAGGTCGAGATTGAAGCCGTCATCTCTCTGACTTAA

Upstream 100 bases:

>100_bases
GGACCTGGTATCTGGCCGGAAGCCCGAGATCGACGCCACCGACCTCGCCGTCAGCCGCTACGCTTGAGCACTCACTGGAT
ACCAATGGAGGACTAAAACT

Downstream 100 bases:

>100_bases
CGGAGAGAGCAGTCCAAGGGACGAGCCGGCGCAATGGCGATCATTGCTCCGGCTTTGCCTTTCGCGACAGGCGGGAAGAG
GCGCAATCGAACGCGCGTGG

Product: endoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MIEPISTNDAPGAVGPYSQAIKVGDLLFVSGQLPIDPATGEFNSANAVEQAEQCLKNLQAIARAAGTDLSKTVKTTVLLT
DLGDFADINRVYTGFFSTPYPARACYEVKALPKGAKVEIEAVISLT

Sequences:

>Translated_126_residues
MIEPISTNDAPGAVGPYSQAIKVGDLLFVSGQLPIDPATGEFNSANAVEQAEQCLKNLQAIARAAGTDLSKTVKTTVLLT
DLGDFADINRVYTGFFSTPYPARACYEVKALPKGAKVEIEAVISLT
>Mature_126_residues
MIEPISTNDAPGAVGPYSQAIKVGDLLFVSGQLPIDPATGEFNSANAVEQAEQCLKNLQAIARAAGTDLSKTVKTTVLLT
DLGDFADINRVYTGFFSTPYPARACYEVKALPKGAKVEIEAVISLT

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family

Homologues:

Organism=Homo sapiens, GI5032215, Length=118, Percent_Identity=51.6949152542373, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=46.4, Blast_Score=119, Evalue=7e-29,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=47.2, Blast_Score=116, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI71982075, Length=118, Percent_Identity=55.0847457627119, Blast_Score=138, Evalue=8e-34,
Organism=Caenorhabditis elegans, GI25148896, Length=118, Percent_Identity=55.0847457627119, Blast_Score=138, Evalue=9e-34,
Organism=Caenorhabditis elegans, GI71982068, Length=118, Percent_Identity=55.0847457627119, Blast_Score=137, Evalue=1e-33,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=37.1900826446281, Blast_Score=90, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=37.2549019607843, Blast_Score=88, Evalue=5e-19,
Organism=Drosophila melanogaster, GI19921376, Length=118, Percent_Identity=41.5254237288136, Blast_Score=98, Evalue=1e-21,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): Y4SK_RHISN (P55654)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444063.1
- ProteinModelPortal:   P55654
- SMR:   P55654
- GeneID:   962437
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01620
- HOGENOM:   HBG695954
- ProtClustDB:   CLSK2484867
- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897
- Gene3D:   G3DSA:3.30.1330.40
- PANTHER:   PTHR11803
- TIGRFAMs:   TIGR00004

Pfam domain/function: PF01042 Ribonuc_L-PSP; SSF55298 YjgF/chorismate_mutase-like

EC number: NA

Molecular weight: Translated: 13291; Mature: 13291

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEPISTNDAPGAVGPYSQAIKVGDLLFVSGQLPIDPATGEFNSANAVEQAEQCLKNLQA
CCCCCCCCCCCCCCCCHHHHEECCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
IARAAGTDLSKTVKTTVLLTDLGDFADINRVYTGFFSTPYPARACYEVKALPKGAKVEIE
HHHHHCCCHHHHHHHHEEEECCCCHHHHHHHHHHCCCCCCCCHHEEEEECCCCCCCEEEE
AVISLT
EEEECC
>Mature Secondary Structure
MIEPISTNDAPGAVGPYSQAIKVGDLLFVSGQLPIDPATGEFNSANAVEQAEQCLKNLQA
CCCCCCCCCCCCCCCCHHHHEECCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
IARAAGTDLSKTVKTTVLLTDLGDFADINRVYTGFFSTPYPARACYEVKALPKGAKVEIE
HHHHHCCCHHHHHHHHEEEECCCCHHHHHHHHHHCCCCCCCCHHEEEEECCCCCCCEEEE
AVISLT
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424