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Identifier: 16519921

GI number: 16519921

Start: 233129

End: 234127

Strand: Reverse

Name: Not Available

Synonym: NGR_a01840

Alternate gene names: 16519921

Gene position: 234127-233129 (Counterclockwise)

Preceding gene: 16519920

Following gene: 16519928

Centisome position: 43.67

GC content: 60.26

Gene sequence:

>999_bases
ATGACCAAGCACGCCAGCCTCGCGCCACTCTTGGAGAGCTTTTTCCTCCAACGCCTGATGCAACAGCGGCAGGCAAGCCC
CCATACGATCAGTTCCTATCGCGATACATTTCGGCAACTGCTGAAGTTCGCAGAACGAAGATTGCGCAAGCCGCCCTCTC
GCCTGAACTTCGAGGAGATCGACGCGCCGCTGATCGTTGCCTTCCTTGATGACCTGGAGAACCGCCAGGGTATCAGCGTC
CGCAGCCGCAACCTGCGCCTCACGGCGATTCATTCCTTCTTTCGCTATGCGGCCTTCGAGATACCCGAGCATTCCGCCCA
AATCCAACGCGTGCTTGCGATTCCCAGCAAGCGCTTCACCCGAACCCTCGTTAATTTCCTGACCCGTCCGGAGGTCGATG
CCTTGCTGGCCGCACCGGATCGATCGACCTGGTCCGGCCGCCGCGACCACGCGTTCCTCCTGGTCGCGGTGCAGACCGGA
TTGCGCCTATCGGAGATCACCGGTCTCAAGCGGGATGATCTGTTCTTCGGCACGGGGGCCCACCTGCGCGTCATTGGTAA
AGGGCGCAAGGAACGCTGCACCCCGTTCGCCAAGTCTACGACCGCCGTCTTGAGAAACTGGCTGAAAGAGCCGCAGCGCG
GAGACCAAGGTATCCTGTTTCCCAGCGCCAGAGGTGAGCGGCTGAGCGTTCATGGCGTTCAGTATATGCTGAACAAACAC
CGTCAGATCGCTTCTGCCATGAGCCCGTCGCTGGAGGGAAAGCGCGTCACTGTTCATCGTCTGAGGCACACGATGGCCAT
GGACCTCCTACAGGCCGGCGTCGATCGCGCCGTCATCGCCCTGTGGCTCGGCCATGAATCGGTCGAGACGACACAAATCT
ATCTCGAGGCGACGTTGGCGATGAAGGAGGCGGCGTTGGCAAAGACATCCCCATATTCCGGGAAGTCATCCCGATTCCGG
CCCGACGACAATCTGCTGGCGTTCTTGAACAGCCTGTAG

Upstream 100 bases:

>100_bases
GTCATGTCCACGTGGCCGATACCCAATGGTACCTCACCGGTTCACCCGAGCTGATGAAAGAAGCAATGCGCCGCCTTGAA
CGTCGCTGGGAGGATCGGAC

Downstream 100 bases:

>100_bases
ATCCCGCTGACTATGTCGTGTGGCTCGGCCGATCCTGTAGGAAATCTCGTTGTTCCTCAGACGCTTGCGTTTTCGGTACC
CGACATAGTCGGGTGGGGTA

Product: DNA integration/recombination/inversion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MTKHASLAPLLESFFLQRLMQQRQASPHTISSYRDTFRQLLKFAERRLRKPPSRLNFEEIDAPLIVAFLDDLENRQGISV
RSRNLRLTAIHSFFRYAAFEIPEHSAQIQRVLAIPSKRFTRTLVNFLTRPEVDALLAAPDRSTWSGRRDHAFLLVAVQTG
LRLSEITGLKRDDLFFGTGAHLRVIGKGRKERCTPFAKSTTAVLRNWLKEPQRGDQGILFPSARGERLSVHGVQYMLNKH
RQIASAMSPSLEGKRVTVHRLRHTMAMDLLQAGVDRAVIALWLGHESVETTQIYLEATLAMKEAALAKTSPYSGKSSRFR
PDDNLLAFLNSL

Sequences:

>Translated_332_residues
MTKHASLAPLLESFFLQRLMQQRQASPHTISSYRDTFRQLLKFAERRLRKPPSRLNFEEIDAPLIVAFLDDLENRQGISV
RSRNLRLTAIHSFFRYAAFEIPEHSAQIQRVLAIPSKRFTRTLVNFLTRPEVDALLAAPDRSTWSGRRDHAFLLVAVQTG
LRLSEITGLKRDDLFFGTGAHLRVIGKGRKERCTPFAKSTTAVLRNWLKEPQRGDQGILFPSARGERLSVHGVQYMLNKH
RQIASAMSPSLEGKRVTVHRLRHTMAMDLLQAGVDRAVIALWLGHESVETTQIYLEATLAMKEAALAKTSPYSGKSSRFR
PDDNLLAFLNSL
>Mature_331_residues
TKHASLAPLLESFFLQRLMQQRQASPHTISSYRDTFRQLLKFAERRLRKPPSRLNFEEIDAPLIVAFLDDLENRQGISVR
SRNLRLTAIHSFFRYAAFEIPEHSAQIQRVLAIPSKRFTRTLVNFLTRPEVDALLAAPDRSTWSGRRDHAFLLVAVQTGL
RLSEITGLKRDDLFFGTGAHLRVIGKGRKERCTPFAKSTTAVLRNWLKEPQRGDQGILFPSARGERLSVHGVQYMLNKHR
QIASAMSPSLEGKRVTVHRLRHTMAMDLLQAGVDRAVIALWLGHESVETTQIYLEATLAMKEAALAKTSPYSGKSSRFRP
DDNLLAFLNSL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family

Homologues:

Organism=Escherichia coli, GI1789261, Length=296, Percent_Identity=28.7162162162162, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790244, Length=283, Percent_Identity=28.2685512367491, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4RC_RHISN (P55636)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444041.1
- ProteinModelPortal:   P55636
- GeneID:   962416
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01840
- HOGENOM:   HBG727654
- ProtClustDB:   CLSK893868
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- Gene3D:   G3DSA:1.10.150.130
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz; SSF47823 L_intgrse_like_N

EC number: NA

Molecular weight: Translated: 37710; Mature: 37579

Theoretical pI: Translated: 11.26; Mature: 11.26

Prosite motif: NA

Important sites: ACT_SITE 294-294

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKHASLAPLLESFFLQRLMQQRQASPHTISSYRDTFRQLLKFAERRLRKPPSRLNFEEI
CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC
DAPLIVAFLDDLENRQGISVRSRNLRLTAIHSFFRYAAFEIPEHSAQIQRVLAIPSKRFT
CCHHHHHHHHHHCCCCCCCEECCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
RTLVNFLTRPEVDALLAAPDRSTWSGRRDHAFLLVAVQTGLRLSEITGLKRDDLFFGTGA
HHHHHHHCCCCHHHEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCCCEEEECCC
HLRVIGKGRKERCTPFAKSTTAVLRNWLKEPQRGDQGILFPSARGERLSVHGVQYMLNKH
EEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCEEEHHHHHHHHHHH
RQIASAMSPSLEGKRVTVHRLRHTMAMDLLQAGVDRAVIALWLGHESVETTQIYLEATLA
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHH
MKEAALAKTSPYSGKSSRFRPDDNLLAFLNSL
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
TKHASLAPLLESFFLQRLMQQRQASPHTISSYRDTFRQLLKFAERRLRKPPSRLNFEEI
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC
DAPLIVAFLDDLENRQGISVRSRNLRLTAIHSFFRYAAFEIPEHSAQIQRVLAIPSKRFT
CCHHHHHHHHHHCCCCCCCEECCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
RTLVNFLTRPEVDALLAAPDRSTWSGRRDHAFLLVAVQTGLRLSEITGLKRDDLFFGTGA
HHHHHHHCCCCHHHEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCCCEEEECCC
HLRVIGKGRKERCTPFAKSTTAVLRNWLKEPQRGDQGILFPSARGERLSVHGVQYMLNKH
EEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCEEEHHHHHHHHHHH
RQIASAMSPSLEGKRVTVHRLRHTMAMDLLQAGVDRAVIALWLGHESVETTQIYLEATLA
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHH
MKEAALAKTSPYSGKSSRFRPDDNLLAFLNSL
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424