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The map label for this gene is y4oU

Identifier: 16519890

GI number: 16519890

Start: 282036

End: 283244

Strand: Reverse

Name: y4oU

Synonym: NGR_a02150

Alternate gene names: NA

Gene position: 283244-282036 (Counterclockwise)

Preceding gene: 16519888

Following gene: 16519891

Centisome position: 52.83

GC content: 63.36

Gene sequence:

>1209_bases
ATGAATACAGTTTATGTGGTCGGGACCTGCGATACCAAGGGCGGCGAACTGCGCTATCTCCGCGATCTTATCCGGCAAGC
AGGGTGTGACGCTGTCCTGGTCGACGTTTCCGTCTCGGAGTTCCACAGCCAAGCTGCGGATGTCGACGTTCAGCCGTCGG
AGGTCGCGCGCTTCCATCCGAACCCGCCGAAGCCCGAGGATCTCAAGGACCGCGGCAAGGCTGTCGCCGCCATGGCGCAA
GCCCTGGTGGAATTTATCCGGTCACGACCGGACGTCGACGGCATCATTGGTGCCGGCGGTACCGGCGGTACGGCGCTGAT
CGCTCCTGCCCTGCGGGCGCTGCCGATCGGCACCCCGAAGGTGCTCGTTTCCACCGTCGCCTCAGGCAATGTCGCCCCCT
ATGTCGGGCCGACCGATATCAGCATGATGTACTCGGTCACGGACGTCTCCGGGCTTAACCGCATCTCTCGGGTGGTCCTC
GCCAACGCCGCCCATTCCGTAGCCGGCATGGTCCTCAACAAGGTTAGCGCCGCCAAGGACGAGAGGCCGGCCATCGGCCT
GACGATGTTCGGTGTCACGACCCCTTGCGTCCAGGCGGTCACCCGTGCGTTGGAGGCAGACTTCGACTGCTTGGTGTTTC
ATGCCACCGGAACCGGCGGCCAGTCCTTCGAGAAGCTCGCCGATTCCGCCCTGCTTGTCGGCGGGATTGATGTCTCCACG
ACGGAGGTCTGCGACTATCTGGTCGGCGGCGTCTTCCCCTGTACGGCCGATCGCTTCGGTGCCTTCGCCCGGACCAGACT
GCCCTATGTCGGCTCCTGCGGTGCGCTCGACATGGTCAATTTCGGGGCGATGGACACAGTGCCCAGCCGATTTCGCTCGC
GCCGTCTGCATGTCCACAATCCCCAGGTCACGCTGATGCGCACGACCCCTGAGGAGTGCAACAGGATTGGCGAATGGATC
GCGGAACGGCTGAACCTCTGTGAGGGGACGGTCCGCTTCCTGATCCCGGAGCTCGGTGTCTCGGCGATCGATGCGCCCGG
TCAGCCCTTCCACGATCCTGAAGCAGATAGCGCGCTCTTCGCAGCGCTCGAGCGCACCCTTCGCCGGACGACCAAGCGGC
AACTCATCCGCGTTCCCCTTCACATCAATGATCCGCAATTTGCGGAACTCCTTGTCACCAACTTCAAAGAGGCCCTTCGT
GAGCACTGA

Upstream 100 bases:

>100_bases
ACCCAAATCGGCGGCCTCAGCCAATTGATTTGCTGTGGCGCGCCACTACCGTTTCTTTGAGGCGAGGAAAGCCCGCTGAG
GAAGGGCCGGGAGGAGAAAG

Downstream 100 bases:

>100_bases
TACTCTTGTCAAGCGTCCCACTCGTTCTGAGTTGATCGACCGTTTCCATAGTAAGATCCGCGCCGGCGAGCCGATCATCG
GCGGCGGCGCCGGCACGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MNTVYVVGTCDTKGGELRYLRDLIRQAGCDAVLVDVSVSEFHSQAADVDVQPSEVARFHPNPPKPEDLKDRGKAVAAMAQ
ALVEFIRSRPDVDGIIGAGGTGGTALIAPALRALPIGTPKVLVSTVASGNVAPYVGPTDISMMYSVTDVSGLNRISRVVL
ANAAHSVAGMVLNKVSAAKDERPAIGLTMFGVTTPCVQAVTRALEADFDCLVFHATGTGGQSFEKLADSALLVGGIDVST
TEVCDYLVGGVFPCTADRFGAFARTRLPYVGSCGALDMVNFGAMDTVPSRFRSRRLHVHNPQVTLMRTTPEECNRIGEWI
AERLNLCEGTVRFLIPELGVSAIDAPGQPFHDPEADSALFAALERTLRRTTKRQLIRVPLHINDPQFAELLVTNFKEALR
EH

Sequences:

>Translated_402_residues
MNTVYVVGTCDTKGGELRYLRDLIRQAGCDAVLVDVSVSEFHSQAADVDVQPSEVARFHPNPPKPEDLKDRGKAVAAMAQ
ALVEFIRSRPDVDGIIGAGGTGGTALIAPALRALPIGTPKVLVSTVASGNVAPYVGPTDISMMYSVTDVSGLNRISRVVL
ANAAHSVAGMVLNKVSAAKDERPAIGLTMFGVTTPCVQAVTRALEADFDCLVFHATGTGGQSFEKLADSALLVGGIDVST
TEVCDYLVGGVFPCTADRFGAFARTRLPYVGSCGALDMVNFGAMDTVPSRFRSRRLHVHNPQVTLMRTTPEECNRIGEWI
AERLNLCEGTVRFLIPELGVSAIDAPGQPFHDPEADSALFAALERTLRRTTKRQLIRVPLHINDPQFAELLVTNFKEALR
EH
>Mature_402_residues
MNTVYVVGTCDTKGGELRYLRDLIRQAGCDAVLVDVSVSEFHSQAADVDVQPSEVARFHPNPPKPEDLKDRGKAVAAMAQ
ALVEFIRSRPDVDGIIGAGGTGGTALIAPALRALPIGTPKVLVSTVASGNVAPYVGPTDISMMYSVTDVSGLNRISRVVL
ANAAHSVAGMVLNKVSAAKDERPAIGLTMFGVTTPCVQAVTRALEADFDCLVFHATGTGGQSFEKLADSALLVGGIDVST
TEVCDYLVGGVFPCTADRFGAFARTRLPYVGSCGALDMVNFGAMDTVPSRFRSRRLHVHNPQVTLMRTTPEECNRIGEWI
AERLNLCEGTVRFLIPELGVSAIDAPGQPFHDPEADSALFAALERTLRRTTKRQLIRVPLHINDPQFAELLVTNFKEALR
EH

Specific function: Unknown

COG id: COG5441

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0261 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4OU_RHISN (P55606)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444010.1
- GeneID:   962579
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02150
- HOGENOM:   HBG373911
- ProtClustDB:   PRK02399
- HAMAP:   MF_00677
- InterPro:   IPR008322
- PIRSF:   PIRSF033271

Pfam domain/function: PF06792 UPF0261

EC number: NA

Molecular weight: Translated: 43098; Mature: 43098

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTVYVVGTCDTKGGELRYLRDLIRQAGCDAVLVDVSVSEFHSQAADVDVQPSEVARFHP
CCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHCCCC
NPPKPEDLKDRGKAVAAMAQALVEFIRSRPDVDGIIGAGGTGGTALIAPALRALPIGTPK
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCHH
VLVSTVASGNVAPYVGPTDISMMYSVTDVSGLNRISRVVLANAAHSVAGMVLNKVSAAKD
HHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ERPAIGLTMFGVTTPCVQAVTRALEADFDCLVFHATGTGGQSFEKLADSALLVGGIDVST
CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCEEEEECCCCCH
TEVCDYLVGGVFPCTADRFGAFARTRLPYVGSCGALDMVNFGAMDTVPSRFRSRRLHVHN
HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCEEEEC
PQVTLMRTTPEECNRIGEWIAERLNLCEGTVRFLIPELGVSAIDAPGQPFHDPEADSALF
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHH
AALERTLRRTTKRQLIRVPLHINDPQFAELLVTNFKEALREH
HHHHHHHHHHHHHHEEEECEECCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNTVYVVGTCDTKGGELRYLRDLIRQAGCDAVLVDVSVSEFHSQAADVDVQPSEVARFHP
CCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHCCCC
NPPKPEDLKDRGKAVAAMAQALVEFIRSRPDVDGIIGAGGTGGTALIAPALRALPIGTPK
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCHH
VLVSTVASGNVAPYVGPTDISMMYSVTDVSGLNRISRVVLANAAHSVAGMVLNKVSAAKD
HHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ERPAIGLTMFGVTTPCVQAVTRALEADFDCLVFHATGTGGQSFEKLADSALLVGGIDVST
CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCEEEEECCCCCH
TEVCDYLVGGVFPCTADRFGAFARTRLPYVGSCGALDMVNFGAMDTVPSRFRSRRLHVHN
HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCEEEEC
PQVTLMRTTPEECNRIGEWIAERLNLCEGTVRFLIPELGVSAIDAPGQPFHDPEADSALF
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHH
AALERTLRRTTKRQLIRVPLHINDPQFAELLVTNFKEALREH
HHHHHHHHHHHHHHEEEECEECCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424