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Identifier: 16519887

GI number: 16519887

Start: 285086

End: 285919

Strand: Reverse

Name: Not Available

Synonym: NGR_a02180

Alternate gene names: 16519887

Gene position: 285919-285086 (Counterclockwise)

Preceding gene: 16519886

Following gene: 16519888

Centisome position: 53.33

GC content: 60.31

Gene sequence:

>834_bases
ATGGCTATTTCATCCAACACCAGCCGCACCACCCGCAAGCTGCTCTGGACCCTCTTCTGGTGCGTGCTCGCCTTCGTCTA
TCTGTTTCCATACACCTGGATGGTGCTGACCGGCTTTCGTCATGGCGTCGACACGATCTCGATGCCGCCACGCTTCATCT
TCGAGCCGACGCTCGCCGGCTTCAAGCACCTGTTCGAGGTGACCGGGTTTCAGAAATACATCATCAACAGTGCGGTGGTG
ACGATTGTCAGCGTCGTGCTGGTGATCGCAGTCTCCGCGCCGGCGGCTTACGCGCTTGCGCATGTCACCAAGCGGGGCGG
TACTCTCCTGGTGGCGATCCTGGTCGCCCGCATCATTCCCGGCATTGCGATCGGCGTGCCGGTCTACCTGCTGGCGACGC
GCCTCCACCAGCTCGATACCTATCAGGCGCTGATCATCATCAATGTGGCCGTCAACATTCCCTTCGCGATCTGGCTGATG
CGCAGCTTCTTCATGGAGGTGCATCCGACGCTCCGCGAGGCGGCGATTTCGGACGGTTGCAGCGAATGGCAGGTCTTCAC
AAAGATCATGATGCCGCTGGTGCTTGGCGGGATGCTGGCGACCGCCGTGTTCGTGTTCATCGCGGTGTGGAACGAATTTC
TATTTGCTCTCATCCTGACCACCTCCGTTAGCCCGACGGCACCTTTGGCGATGCTCGGCTTTAGAACCCAGTACGGCGTG
CAGTGGGACGCTGTCGGTGCTGCGGCGTTCCTGGTGTCGACGCCGGTCATCGCCTTCGCCTTCATAATGCAGCGCTACCT
GGTGCAAGGCCTGACCATGGGCTCCGTCAAGTGA

Upstream 100 bases:

>100_bases
CTCGTGGATCTATGTCGTCTTCGTTCTCGCGATCAGCGCGCCCCTGATCTGGCGCCTGTTCCGCGGCGCAAGCGTCAACC
GCCACTAGGGGAGGTGAGGC

Downstream 100 bases:

>100_bases
CAGGCATGGTTGGTACAATTCTTCGCAGAAAGGCCGAGCAGAATATGACTGATGTAACTATCCGCAATGTCACCAAGCGC
TATGGCGCTCTGACCGTCAT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MAISSNTSRTTRKLLWTLFWCVLAFVYLFPYTWMVLTGFRHGVDTISMPPRFIFEPTLAGFKHLFEVTGFQKYIINSAVV
TIVSVVLVIAVSAPAAYALAHVTKRGGTLLVAILVARIIPGIAIGVPVYLLATRLHQLDTYQALIIINVAVNIPFAIWLM
RSFFMEVHPTLREAAISDGCSEWQVFTKIMMPLVLGGMLATAVFVFIAVWNEFLFALILTTSVSPTAPLAMLGFRTQYGV
QWDAVGAAAFLVSTPVIAFAFIMQRYLVQGLTMGSVK

Sequences:

>Translated_277_residues
MAISSNTSRTTRKLLWTLFWCVLAFVYLFPYTWMVLTGFRHGVDTISMPPRFIFEPTLAGFKHLFEVTGFQKYIINSAVV
TIVSVVLVIAVSAPAAYALAHVTKRGGTLLVAILVARIIPGIAIGVPVYLLATRLHQLDTYQALIIINVAVNIPFAIWLM
RSFFMEVHPTLREAAISDGCSEWQVFTKIMMPLVLGGMLATAVFVFIAVWNEFLFALILTTSVSPTAPLAMLGFRTQYGV
QWDAVGAAAFLVSTPVIAFAFIMQRYLVQGLTMGSVK
>Mature_276_residues
AISSNTSRTTRKLLWTLFWCVLAFVYLFPYTWMVLTGFRHGVDTISMPPRFIFEPTLAGFKHLFEVTGFQKYIINSAVVT
IVSVVLVIAVSAPAAYALAHVTKRGGTLLVAILVARIIPGIAIGVPVYLLATRLHQLDTYQALIIINVAVNIPFAIWLMR
SFFMEVHPTLREAAISDGCSEWQVFTKIMMPLVLGGMLATAVFVFIAVWNEFLFALILTTSVSPTAPLAMLGFRTQYGVQ
WDAVGAAAFLVSTPVIAFAFIMQRYLVQGLTMGSVK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1787571, Length=267, Percent_Identity=30.7116104868914, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1790464, Length=210, Percent_Identity=30, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789860, Length=148, Percent_Identity=31.7567567567568, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4OR_RHISN (P55603)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444007.1
- ProteinModelPortal:   P55603
- SMR:   P55603
- GeneID:   962207
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02180
- HOGENOM:   HBG729451
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 30577; Mature: 30446

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc1ee538)-; HASH(0xb421c88)-; HASH(0xb421c4c)-; HASH(0xae79c24)-; HASH(0xba4520c)-; HASH(0xb32c65c)-; HASH(0xae86ef4)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISSNTSRTTRKLLWTLFWCVLAFVYLFPYTWMVLTGFRHGVDTISMPPRFIFEPTLAG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHH
FKHLFEVTGFQKYIINSAVVTIVSVVLVIAVSAPAAYALAHVTKRGGTLLVAILVARIIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHC
GIAIGVPVYLLATRLHQLDTYQALIIINVAVNIPFAIWLMRSFFMEVHPTLREAAISDGC
HHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
SEWQVFTKIMMPLVLGGMLATAVFVFIAVWNEFLFALILTTSVSPTAPLAMLGFRTQYGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
QWDAVGAAAFLVSTPVIAFAFIMQRYLVQGLTMGSVK
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
>Mature Secondary Structure 
AISSNTSRTTRKLLWTLFWCVLAFVYLFPYTWMVLTGFRHGVDTISMPPRFIFEPTLAG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHH
FKHLFEVTGFQKYIINSAVVTIVSVVLVIAVSAPAAYALAHVTKRGGTLLVAILVARIIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHC
GIAIGVPVYLLATRLHQLDTYQALIIINVAVNIPFAIWLMRSFFMEVHPTLREAAISDGC
HHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
SEWQVFTKIMMPLVLGGMLATAVFVFIAVWNEFLFALILTTSVSPTAPLAMLGFRTQYGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
QWDAVGAAAFLVSTPVIAFAFIMQRYLVQGLTMGSVK
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424