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Identifier: 16519856

GI number: 16519856

Start: 328380

End: 329381

Strand: Direct

Name: Not Available

Synonym: NGR_a02490

Alternate gene names: 16519856

Gene position: 328380-329381 (Clockwise)

Preceding gene: 16519857

Following gene: 16519855

Centisome position: 61.25

GC content: 60.48

Gene sequence:

>1002_bases
ATGACGAAGACCATTATTGACCAGGCCGGGGCTACGCCAGGGGCAATCCGAACTCGGGAAGGCCTCGTTTCCGCCTACCG
TACGGAATTGGCGATTGCAGGGGCCATTGTCCTTCTCGTTCTCGCGGTTGGAACACAGGTGCCGCAGGCGATGAGCTGGG
GCAATTTCGCCAATATTACACAGGCCGGAGCACCGCTGATCATCATGTCGCTCGGCGTGCTTCTCGTCGTCATTACCGGC
GGCATAGACCTTTCTGTCGGCTCGGTCTTCTCACTGACCGGCATGGTCACAGCACAGGCTATGGCCTCAGGTCTCGACGT
CAGCGCCGCGCTGATTGGGCTTGGGGTCGGGCTTGTGTTCGGTTCGATCAACGGCTTTCTCGTCACGGTGGCCGGTCTCG
CGCCTTTCGTCGTCACGCTGATCACCTTTGCCGTGGCCGGCTCACTCGCTTTCATCGTCACCAATGGACGCTCGATGCCG
ATCGGCGATCCGGATTTCTGGCTGCTCAACAGCGGCAGCCTGATACCCGGCGTGCCCAACTACATCCTGTTCTGCATCGT
CCTGCTCGTCGTGATCGAGATCTTTCTCAAGAAGATGGTCGCGGGGCGCTGGTTCTATGCCGTGGGCAGCAGCGCGGCAG
CGGCACGTCTTCTGGGAATTCCCGTCAAGCGGACGCAGTTCTTCGCTTATGTTGCCTCGTCACTTCTCGCATCCTTCTCC
GGATTGCTGACGATTTCCTACATTCTCAATGCGGAATCGACGGCCGGTTCGAGCCTCATGCTGCAGGCGATCGCCGCGGT
TGTGATCGGCGGCGCAAGCCTGCTTGGCGGCACGGGAACGGCGGTGGGCGCGGTTCTCGGAGCGCTCATGATCACGGTCA
TCCAGAACGGCGTCAATCTCATCGGCATCAATAGTTTCTGGCAGGGATCGGTCACCGGCCTCGCCATCCTGATCGCGGTC
CTGATCGATCGCTTCAGCAAATCGCGGCGCGGTGCCGTGTAA

Upstream 100 bases:

>100_bases
ACCAGGTGCTCGCTTTCGATACAGAGGGGCGCTCATCGGGTGTGATCGAGCGGGACGAACTCAGCGAAGACAAGCTTGCG
ACATTGACAGGAATGGCGGC

Downstream 100 bases:

>100_bases
TCCGTCCCGGGGGAGACCTGGACGTCAAGAGGAGGAAGAAGGCATGAGGAAGAAACTGAACGGGTGGCTCGCCATGGCAG
CGGGTGCAGCGCTGGCAGCG

Product: ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MTKTIIDQAGATPGAIRTREGLVSAYRTELAIAGAIVLLVLAVGTQVPQAMSWGNFANITQAGAPLIIMSLGVLLVVITG
GIDLSVGSVFSLTGMVTAQAMASGLDVSAALIGLGVGLVFGSINGFLVTVAGLAPFVVTLITFAVAGSLAFIVTNGRSMP
IGDPDFWLLNSGSLIPGVPNYILFCIVLLVVIEIFLKKMVAGRWFYAVGSSAAAARLLGIPVKRTQFFAYVASSLLASFS
GLLTISYILNAESTAGSSLMLQAIAAVVIGGASLLGGTGTAVGAVLGALMITVIQNGVNLIGINSFWQGSVTGLAILIAV
LIDRFSKSRRGAV

Sequences:

>Translated_333_residues
MTKTIIDQAGATPGAIRTREGLVSAYRTELAIAGAIVLLVLAVGTQVPQAMSWGNFANITQAGAPLIIMSLGVLLVVITG
GIDLSVGSVFSLTGMVTAQAMASGLDVSAALIGLGVGLVFGSINGFLVTVAGLAPFVVTLITFAVAGSLAFIVTNGRSMP
IGDPDFWLLNSGSLIPGVPNYILFCIVLLVVIEIFLKKMVAGRWFYAVGSSAAAARLLGIPVKRTQFFAYVASSLLASFS
GLLTISYILNAESTAGSSLMLQAIAAVVIGGASLLGGTGTAVGAVLGALMITVIQNGVNLIGINSFWQGSVTGLAILIAV
LIDRFSKSRRGAV
>Mature_332_residues
TKTIIDQAGATPGAIRTREGLVSAYRTELAIAGAIVLLVLAVGTQVPQAMSWGNFANITQAGAPLIIMSLGVLLVVITGG
IDLSVGSVFSLTGMVTAQAMASGLDVSAALIGLGVGLVFGSINGFLVTVAGLAPFVVTLITFAVAGSLAFIVTNGRSMPI
GDPDFWLLNSGSLIPGVPNYILFCIVLLVVIEIFLKKMVAGRWFYAVGSSAAAARLLGIPVKRTQFFAYVASSLLASFSG
LLTISYILNAESTAGSSLMLQAIAAVVIGGASLLGGTGTAVGAVLGALMITVIQNGVNLIGINSFWQGSVTGLAILIAVL
IDRFSKSRRGAV

Specific function: Probably part of the binding-protein-dependent transport system y4mIJK. This system probably transports a sugar. Probably responsible for the translocation of the substrate across the membrane

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily

Homologues:

Organism=Escherichia coli, GI1790191, Length=324, Percent_Identity=32.7160493827161, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1790524, Length=272, Percent_Identity=33.4558823529412, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1788896, Length=319, Percent_Identity=32.2884012539185, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI145693152, Length=269, Percent_Identity=31.5985130111524, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI87082395, Length=298, Percent_Identity=33.5570469798658, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI145693214, Length=251, Percent_Identity=34.6613545816733, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1787794, Length=315, Percent_Identity=27.3015873015873, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789992, Length=128, Percent_Identity=40.625, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787793, Length=259, Percent_Identity=30.8880308880309, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788471, Length=283, Percent_Identity=30.3886925795053, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4MJ_RHISN (P55569)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443976.1
- GeneID:   962622
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02490
- HOGENOM:   HBG663180
- ProtClustDB:   CLSK784542
- InterPro:   IPR001851

Pfam domain/function: PF02653 BPD_transp_2

EC number: NA

Molecular weight: Translated: 33908; Mature: 33777

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc559318)-; HASH(0xb71e7b4)-; HASH(0xc4cb758)-; HASH(0xc35b294)-; HASH(0xc4e55ac)-; HASH(0xc0c7f70)-; HASH(0xbbb300c)-; HASH(0xc455748)-; HASH(0xbc69a70)-; HASH(0xbaff2bc)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTIIDQAGATPGAIRTREGLVSAYRTELAIAGAIVLLVLAVGTQVPQAMSWGNFANIT
CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHH
QAGAPLIIMSLGVLLVVITGGIDLSVGSVFSLTGMVTAQAMASGLDVSAALIGLGVGLVF
HCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
GSINGFLVTVAGLAPFVVTLITFAVAGSLAFIVTNGRSMPIGDPDFWLLNSGSLIPGVPN
HCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCHH
YILFCIVLLVVIEIFLKKMVAGRWFYAVGSSAAAARLLGIPVKRTQFFAYVASSLLASFS
HHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GLLTISYILNAESTAGSSLMLQAIAAVVIGGASLLGGTGTAVGAVLGALMITVIQNGVNL
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCE
IGINSFWQGSVTGLAILIAVLIDRFSKSRRGAV
EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure 
TKTIIDQAGATPGAIRTREGLVSAYRTELAIAGAIVLLVLAVGTQVPQAMSWGNFANIT
CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHH
QAGAPLIIMSLGVLLVVITGGIDLSVGSVFSLTGMVTAQAMASGLDVSAALIGLGVGLVF
HCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
GSINGFLVTVAGLAPFVVTLITFAVAGSLAFIVTNGRSMPIGDPDFWLLNSGSLIPGVPN
HCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCHH
YILFCIVLLVVIEIFLKKMVAGRWFYAVGSSAAAARLLGIPVKRTQFFAYVASSLLASFS
HHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GLLTISYILNAESTAGSSLMLQAIAAVVIGGASLLGGTGTAVGAVLGALMITVIQNGVNL
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCE
IGINSFWQGSVTGLAILIAVLIDRFSKSRRGAV
EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424