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The map label for this gene is spsC

Identifier: 16519852

GI number: 16519852

Start: 332578

End: 332808

Strand: Direct

Name: spsC

Synonym: NGR_a02530

Alternate gene names: NA

Gene position: 332578-332808 (Clockwise)

Preceding gene: 16519854

Following gene: 16519851

Centisome position: 62.03

GC content: 54.55

Gene sequence:

>231_bases
ATGGCGAAGCGCATCAAAACTCCAGCCGATATCGGCGCTCTAGTCCGCATCGTGCGCAAGGAGCAAAACTTGCGGCAGGA
TGAGCTTGCGGGCGTTGCCGGCGTTGGCCTCCGGTTCATTGTCGATCTCGAAGCGGGCAAACCGACAGCTCAGATAGGAA
AAGTGTTGCAGGTTTTGCAAACACTCGGCTGTTCGATCGATATTCTGGCTCCTGGTGAACGTAGAAAATGA

Upstream 100 bases:

>100_bases
TGGCGATACGCCTTCTCGGGCATAAATTTTCCCGACCGGGAAATTTCACTCGACAGGGCGGCCGATATGATGCTACTTTC
CCGAGCGGGAAAACAAAAAA

Downstream 100 bases:

>100_bases
CGGTAAGGGTTCTCAACGTCTGGTGGGATGGTCGCATTGTCGGGCAATTCACCCAGGACAGGCACGGTGATATCGGCTTT
GCCTACAGCGAAGCTTGGCT

Product: transcription regulator; symbiotic plasmid stability locus

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MAKRIKTPADIGALVRIVRKEQNLRQDELAGVAGVGLRFIVDLEAGKPTAQIGKVLQVLQTLGCSIDILAPGERRK

Sequences:

>Translated_76_residues
MAKRIKTPADIGALVRIVRKEQNLRQDELAGVAGVGLRFIVDLEAGKPTAQIGKVLQVLQTLGCSIDILAPGERRK
>Mature_75_residues
AKRIKTPADIGALVRIVRKEQNLRQDELAGVAGVGLRFIVDLEAGKPTAQIGKVLQVLQTLGCSIDILAPGERRK

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4MF_RHISN (P55565)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443972.1
- ProteinModelPortal:   P55565
- GeneID:   962617
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02530
- HOGENOM:   HBG727458
- ProtClustDB:   CLSK516115
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR017507
- SMART:   SM00530
- TIGRFAMs:   TIGR03070

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 8205; Mature: 8074

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRIKTPADIGALVRIVRKEQNLRQDELAGVAGVGLRFIVDLEAGKPTAQIGKVLQVLQ
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH
TLGCSIDILAPGERRK
HHCCCEEEECCCCCCC
>Mature Secondary Structure 
AKRIKTPADIGALVRIVRKEQNLRQDELAGVAGVGLRFIVDLEAGKPTAQIGKVLQVLQ
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH
TLGCSIDILAPGERRK
HHCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424