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The map label for this gene is spsD

Identifier: 16519851

GI number: 16519851

Start: 332805

End: 334067

Strand: Direct

Name: spsD

Synonym: NGR_a02540

Alternate gene names: 16519851

Gene position: 332805-334067 (Clockwise)

Preceding gene: 16519852

Following gene: 16519850

Centisome position: 62.07

GC content: 57.72

Gene sequence:

>1263_bases
ATGACGGTAAGGGTTCTCAACGTCTGGTGGGATGGTCGCATTGTCGGGCAATTCACCCAGGACAGGCACGGTGATATCGG
CTTTGCCTACAGCGAAGCTTGGCTCGACGACGAAAACACGCTTCCGCTGTCTGCCTCCCTCCCGAAGCGCGCAGAACCTT
TTTCTCGTCGTGAATGCCGACCATTTTTCGGCGGCCTGTTGCCCGAGGAAAGCCAGCGTCTTGTGACAGCGCAGGCATTG
GGCGTTTCACCTGCGAACGACTTTGCGCTCCTTGATCGCTTGGGCGGCGACGTCGCCGGCGCACTTCAGCTTTTGCCGGA
AGATCAGGAGCCCATAGAGGCAGGGCCGCTTCCAGACCAGCAGCCGACACCTCTGGATGAGGCCGGAATCGTTCGGATAC
TGGACGCACTTCCGACGCGGCCGCTATTGGCCGGCCAGGAAGGCTTGAGGCTATCGCTAGCCGGCGCGCAGTCCAAGGTG
CCGCTTGTTTTGATTGACGGCGAGCTCGCGCTTCCAGTTTCCGGACAAGCAACAACACATATTCTGAAACCACCAATCGC
GCGCTTTCCAGGGACAACCGAAAACGAAGCATTCGTGATGAGACTCGCTGCAGCGATCGGCCTCGACGTTGCACCAGTCG
AACCGAGGTCTGCGAATGGGCGCCCTTTTCTTGTGGTCGAGCGATACGATCGCTATCGCGATGCCGACGGTGTGGTTCAC
CGCATCCACCAGGAAGACTTTTGCCAAGCACTTGGTGTGCCGCCTGAAACGAAATACGCCAGCGAGGGCGGGCCGACATT
CAAGGACTGCTTTGAGCTGTTGCGGCGAGTATCAGCGCGGCCCGCTACAGATGTGTTGAAGCTGCTGGACGCCGCGATCT
TCAACCTGGTTGTCGGAAATGCCGATGCCCACGGCAAGAATTTCTCGATCCTCTACGACGATCAGGGACCGAAAATGGCC
CCGCTGTACGATCTGCTTTCTACGGTCGCCTATCCAGACCTTTCACCGAAAATGGCCATGAGGATCGGGAAACGGGTCAC
GCTTGCCGAGATGGACGCTGATGGGTGGCAGACTTTTGCAAAGGAAGCTGGAGTTGGCTTACCTTTGGTGCGCCGCCGAA
TTACAAACTTGGTCGACTCCACCGCTGAAGCCGTAGCGAGAGTATTGGAAGACACCTCAGACCTCTACATCGATTCAGCT
AGGATAAATCACTTTGCGGACTCGGTTGCAGGGCGCGCCAAACTCGTCAGGTTGTCGATTTAG

Upstream 100 bases:

>100_bases
TCGAAGCGGGCAAACCGACAGCTCAGATAGGAAAAGTGTTGCAGGTTTTGCAAACACTCGGCTGTTCGATCGATATTCTG
GCTCCTGGTGAACGTAGAAA

Downstream 100 bases:

>100_bases
CCGCTGTCTTCCACGTCTGGATCGGGCACAAGAATAGGCCATGGCTTTCCGGAGGCGAGATCGGGATGCCGCGGCTCAGT
GGTCTTTTTTCCGCTGCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MTVRVLNVWWDGRIVGQFTQDRHGDIGFAYSEAWLDDENTLPLSASLPKRAEPFSRRECRPFFGGLLPEESQRLVTAQAL
GVSPANDFALLDRLGGDVAGALQLLPEDQEPIEAGPLPDQQPTPLDEAGIVRILDALPTRPLLAGQEGLRLSLAGAQSKV
PLVLIDGELALPVSGQATTHILKPPIARFPGTTENEAFVMRLAAAIGLDVAPVEPRSANGRPFLVVERYDRYRDADGVVH
RIHQEDFCQALGVPPETKYASEGGPTFKDCFELLRRVSARPATDVLKLLDAAIFNLVVGNADAHGKNFSILYDDQGPKMA
PLYDLLSTVAYPDLSPKMAMRIGKRVTLAEMDADGWQTFAKEAGVGLPLVRRRITNLVDSTAEAVARVLEDTSDLYIDSA
RINHFADSVAGRAKLVRLSI

Sequences:

>Translated_420_residues
MTVRVLNVWWDGRIVGQFTQDRHGDIGFAYSEAWLDDENTLPLSASLPKRAEPFSRRECRPFFGGLLPEESQRLVTAQAL
GVSPANDFALLDRLGGDVAGALQLLPEDQEPIEAGPLPDQQPTPLDEAGIVRILDALPTRPLLAGQEGLRLSLAGAQSKV
PLVLIDGELALPVSGQATTHILKPPIARFPGTTENEAFVMRLAAAIGLDVAPVEPRSANGRPFLVVERYDRYRDADGVVH
RIHQEDFCQALGVPPETKYASEGGPTFKDCFELLRRVSARPATDVLKLLDAAIFNLVVGNADAHGKNFSILYDDQGPKMA
PLYDLLSTVAYPDLSPKMAMRIGKRVTLAEMDADGWQTFAKEAGVGLPLVRRRITNLVDSTAEAVARVLEDTSDLYIDSA
RINHFADSVAGRAKLVRLSI
>Mature_419_residues
TVRVLNVWWDGRIVGQFTQDRHGDIGFAYSEAWLDDENTLPLSASLPKRAEPFSRRECRPFFGGLLPEESQRLVTAQALG
VSPANDFALLDRLGGDVAGALQLLPEDQEPIEAGPLPDQQPTPLDEAGIVRILDALPTRPLLAGQEGLRLSLAGAQSKVP
LVLIDGELALPVSGQATTHILKPPIARFPGTTENEAFVMRLAAAIGLDVAPVEPRSANGRPFLVVERYDRYRDADGVVHR
IHQEDFCQALGVPPETKYASEGGPTFKDCFELLRRVSARPATDVLKLLDAAIFNLVVGNADAHGKNFSILYDDQGPKMAP
LYDLLSTVAYPDLSPKMAMRIGKRVTLAEMDADGWQTFAKEAGVGLPLVRRRITNLVDSTAEAVARVLEDTSDLYIDSAR
INHFADSVAGRAKLVRLSI

Specific function: Unbalanced Or Excessive Expression Of Hipa Is Toxic To The Cell. [C]

COG id: COG3550

COG function: function code R; Uncharacterized protein related to capsule biosynthesis enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli hipA, H.influenzae HI_0665 and y4dM

Homologues:

Organism=Escherichia coli, GI1787785, Length=346, Percent_Identity=32.6589595375723, Blast_Score=145, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4ME_RHISN (P55564)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443971.1
- GeneID:   962366
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02540
- HOGENOM:   HBG485371
- ProtClustDB:   CLSK563538
- InterPro:   IPR012893
- InterPro:   IPR012894
- InterPro:   IPR017508
- TIGRFAMs:   TIGR03071

Pfam domain/function: PF07804 HipA_C; PF07805 HipA_N

EC number: NA

Molecular weight: Translated: 45730; Mature: 45598

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVRVLNVWWDGRIVGQFTQDRHGDIGFAYSEAWLDDENTLPLSASLPKRAEPFSRRECR
CEEEEEEEEECCEEEECCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PFFGGLLPEESQRLVTAQALGVSPANDFALLDRLGGDVAGALQLLPEDQEPIEAGPLPDQ
HHHCCCCCCCHHHEEEHHHHCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCC
QPTPLDEAGIVRILDALPTRPLLAGQEGLRLSLAGAQSKVPLVLIDGELALPVSGQATTH
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCEEECCCCCCCCE
ILKPPIARFPGTTENEAFVMRLAAAIGLDVAPVEPRSANGRPFLVVERYDRYRDADGVVH
ECCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHH
RIHQEDFCQALGVPPETKYASEGGPTFKDCFELLRRVSARPATDVLKLLDAAIFNLVVGN
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
ADAHGKNFSILYDDQGPKMAPLYDLLSTVAYPDLSPKMAMRIGKRVTLAEMDADGWQTFA
CCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCEEEEEECCCHHHHHHH
KEAGVGLPLVRRRITNLVDSTAEAVARVLEDTSDLYIDSARINHFADSVAGRAKLVRLSI
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEHHHHHHHHHHHCCCEEEEEECC
>Mature Secondary Structure 
TVRVLNVWWDGRIVGQFTQDRHGDIGFAYSEAWLDDENTLPLSASLPKRAEPFSRRECR
EEEEEEEEECCEEEECCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PFFGGLLPEESQRLVTAQALGVSPANDFALLDRLGGDVAGALQLLPEDQEPIEAGPLPDQ
HHHCCCCCCCHHHEEEHHHHCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCC
QPTPLDEAGIVRILDALPTRPLLAGQEGLRLSLAGAQSKVPLVLIDGELALPVSGQATTH
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCEEECCCCCCCCE
ILKPPIARFPGTTENEAFVMRLAAAIGLDVAPVEPRSANGRPFLVVERYDRYRDADGVVH
ECCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHH
RIHQEDFCQALGVPPETKYASEGGPTFKDCFELLRRVSARPATDVLKLLDAAIFNLVVGN
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
ADAHGKNFSILYDDQGPKMAPLYDLLSTVAYPDLSPKMAMRIGKRVTLAEMDADGWQTFA
CCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCEEEEEECCCHHHHHHH
KEAGVGLPLVRRRITNLVDSTAEAVARVLEDTSDLYIDSARINHFADSVAGRAKLVRLSI
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEHHHHHHHHHHHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424