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Identifier: 16519819

GI number: 16519819

Start: 190027

End: 191577

Strand: Direct

Name: Not Available

Synonym: NGR_a01560

Alternate gene names: NA

Gene position: 190027-191577 (Clockwise)

Preceding gene: 16519970

Following gene: 16519670

Centisome position: 35.44

GC content: 63.12

Gene sequence:

>1551_bases
ATGCCGAGACGGAAGCAAGCAAGACGAACGACAGTGAGGGATATCCGGACTATTCTGCGCCTGACCCATGAAGAGGGTCT
TTCGGTGCGCGAGATTGCCGAGCGGCTGAAGATCGGCAAGAGCTCGGTATCGACCTATTTGCTGCGATCTCGGGAAGCCG
GGCTTTCGTGGCCGTTGCCAATCGGCGCGGACGAGGATGCAAAGCTGGAGCGGCGGCTGTTCGGCCGAGCCGGTCGACCG
CCGCGCGATCTCAGCGAGCCGGACTGGGCGCTGGTGGTTCGGGAGCTGAAGCGCAAAGGCGTGACGCTGACGCTTCTATG
GCAGGAATACCGCGCCAGCCATCCTGATGGTTACGGCTTCACCTGGTTCTGCGAGCAGGTTGCCGCCTTTCGGCAGCGCA
CCAGTGTAGCGTTCCGCAATCGGCACGCGGCGGGCGCCGTGATGCAGACCGACTATGCCGGGCCGACGGTGCCGGTGATC
GATCCGGCAACCGGTGTCATCCATCCGGCCCAAATCTTTGTCGCGGTGCTGGGCGCCTCCAACCTGACCTTCGCCCATGC
CAGCTTTAGCCAGCAGTTGCCGGATTGGATCGACGGTCAGGTGCGTGCTCTGACCTTCTATGGTGGGGTCACCAAGGCAA
TCGTGTGCGACAACCTCAAATCGGGGGTGGCCAAGGCCCTTTGGTTCGAGCCGACATTGACTGCGACGTTCGCCGCCATG
GCGGAGCATTACGACACCACGATCCTGCCGACCCGCAGCAGGAAACCGCGCGACAAAGGCCGGGTCGAAGGCGCGGTATT
GATCGTGGAACGCTGGATTCTGGCCCGGCTCAGGAACCGTACCTTCTTCTCGCTTGCCGCCCTCAACACGGCGATTGCCG
AATTGCTCGAGGACCTGAACAACCGGACGATGCGCCATGTCGGCAAAAGCCGCCGCGAGCTGTTCGAGGAGATCGAGCGG
CCAGCCTTGAAGCCCTTGCCGGCGATACCGTTCGAATATGCGGAATGGAAGTCGGCGAAGGTCCATCCGGACTATCATGT
CGAGGTCGACAAGACCTTCTACTCGGTGCCGCATCGGCTGATCGGATGCACCCTCCAGGTGCGGCTCACCCACCGGGTGG
TCGAGATCTTCCACGACCACCAGCGTGTCGCCAGCCATGTTCGCCGCTCCCAGCGTTCCGGCCACGTCACCGTCAACGAC
CATATGCCCAAGGCGCATCAGCGCTATGCCAACACCACGCCGGCCAATCTGATCGGCCGTGCGACCCAGATCGGCCCCAA
TGCCGCCATCCTGGTCGAACGCATGATGCGCGACAGGCCGCATCCGGAACAGGGATACCGCTCGGCCATGGGCATTCTGT
CGCTGGCGCCGCGCTATGGATCCCAGCGCCTCGAGGCGGCCTGTGAGCGGGCGCTCACCATTAATGCCATCACCTATTCC
TCCGTCGCCTCCATCCTCAAATCCGGCCTCGACCGGGAAAGACCGCAGGCTGAACACGCGGCCCCCACGCCTGCGCATAC
CAATATCCGTGGCCGATCCTACTACCAGTGA

Upstream 100 bases:

>100_bases
CGCTAAATCCCGGACAGTTTCCGGCGGCGGTTTGACGGGTTGGTTCGCGGCTGCGCCGTCTTGTTGGTTAGGCCTCTCAC
GACAACGTTGAGAGGGGCCG

Downstream 100 bases:

>100_bases
AGGAAGCAAGAATGCTGACGAACCCCACCCTCGACCAGATGCAGGCCCTCGGGCTGACGGGCATGGCCGCCGCCTGGCGC
GAATTGACCGAGCAGTCCGG

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 515

Protein sequence:

>516_residues
MPRRKQARRTTVRDIRTILRLTHEEGLSVREIAERLKIGKSSVSTYLLRSREAGLSWPLPIGADEDAKLERRLFGRAGRP
PRDLSEPDWALVVRELKRKGVTLTLLWQEYRASHPDGYGFTWFCEQVAAFRQRTSVAFRNRHAAGAVMQTDYAGPTVPVI
DPATGVIHPAQIFVAVLGASNLTFAHASFSQQLPDWIDGQVRALTFYGGVTKAIVCDNLKSGVAKALWFEPTLTATFAAM
AEHYDTTILPTRSRKPRDKGRVEGAVLIVERWILARLRNRTFFSLAALNTAIAELLEDLNNRTMRHVGKSRRELFEEIER
PALKPLPAIPFEYAEWKSAKVHPDYHVEVDKTFYSVPHRLIGCTLQVRLTHRVVEIFHDHQRVASHVRRSQRSGHVTVND
HMPKAHQRYANTTPANLIGRATQIGPNAAILVERMMRDRPHPEQGYRSAMGILSLAPRYGSQRLEAACERALTINAITYS
SVASILKSGLDRERPQAEHAAPTPAHTNIRGRSYYQ

Sequences:

>Translated_516_residues
MPRRKQARRTTVRDIRTILRLTHEEGLSVREIAERLKIGKSSVSTYLLRSREAGLSWPLPIGADEDAKLERRLFGRAGRP
PRDLSEPDWALVVRELKRKGVTLTLLWQEYRASHPDGYGFTWFCEQVAAFRQRTSVAFRNRHAAGAVMQTDYAGPTVPVI
DPATGVIHPAQIFVAVLGASNLTFAHASFSQQLPDWIDGQVRALTFYGGVTKAIVCDNLKSGVAKALWFEPTLTATFAAM
AEHYDTTILPTRSRKPRDKGRVEGAVLIVERWILARLRNRTFFSLAALNTAIAELLEDLNNRTMRHVGKSRRELFEEIER
PALKPLPAIPFEYAEWKSAKVHPDYHVEVDKTFYSVPHRLIGCTLQVRLTHRVVEIFHDHQRVASHVRRSQRSGHVTVND
HMPKAHQRYANTTPANLIGRATQIGPNAAILVERMMRDRPHPEQGYRSAMGILSLAPRYGSQRLEAACERALTINAITYS
SVASILKSGLDRERPQAEHAAPTPAHTNIRGRSYYQ
>Mature_515_residues
PRRKQARRTTVRDIRTILRLTHEEGLSVREIAERLKIGKSSVSTYLLRSREAGLSWPLPIGADEDAKLERRLFGRAGRPP
RDLSEPDWALVVRELKRKGVTLTLLWQEYRASHPDGYGFTWFCEQVAAFRQRTSVAFRNRHAAGAVMQTDYAGPTVPVID
PATGVIHPAQIFVAVLGASNLTFAHASFSQQLPDWIDGQVRALTFYGGVTKAIVCDNLKSGVAKALWFEPTLTATFAAMA
EHYDTTILPTRSRKPRDKGRVEGAVLIVERWILARLRNRTFFSLAALNTAIAELLEDLNNRTMRHVGKSRRELFEEIERP
ALKPLPAIPFEYAEWKSAKVHPDYHVEVDKTFYSVPHRLIGCTLQVRLTHRVVEIFHDHQRVASHVRRSQRSGHVTVNDH
MPKAHQRYANTTPANLIGRATQIGPNAAILVERMMRDRPHPEQGYRSAMGILSLAPRYGSQRLEAACERALTINAITYSS
VASILKSGLDRERPQAEHAAPTPAHTNIRGRSYYQ

Specific function: Unknown

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4BL_RHISN (P55379)

Other databases:

- EMBL:   U00090
- EMBL:   U00090
- EMBL:   U00090
- RefSeq:   NP_443789.1
- RefSeq:   NP_443939.1
- RefSeq:   NP_444069.1
- RefSeq:   YP_002822318.1
- RefSeq:   YP_002823144.1
- RefSeq:   YP_002823695.1
- RefSeq:   YP_002826747.1
- GeneID:   7788039
- GeneID:   7788674
- GeneID:   7789635
- GeneID:   7791510
- GeneID:   962187
- GeneID:   962348
- GeneID:   962452
- GenomeReviews:   U00090_GR
- GenomeReviews:   U00090_GR
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00180
- KEGG:   rhi:NGR_a01560
- KEGG:   rhi:NGR_a02860
- HOGENOM:   HBG515540
- ProtClustDB:   CLSK893847
- GO:   GO:0032196
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR017895
- InterPro:   IPR001584
- InterPro:   IPR013249
- InterPro:   IPR012337
- Gene3D:   G3DSA:1.10.10.60

Pfam domain/function: PF00665 rve; PF08281 Sigma70_r4_2; SSF46689 Homeodomain_like; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 58267; Mature: 58136

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS50532 HTH_IS408; PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRRKQARRTTVRDIRTILRLTHEEGLSVREIAERLKIGKSSVSTYLLRSREAGLSWPLP
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC
IGADEDAKLERRLFGRAGRPPRDLSEPDWALVVRELKRKGVTLTLLWQEYRASHPDGYGF
CCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCH
TWFCEQVAAFRQRTSVAFRNRHAAGAVMQTDYAGPTVPVIDPATGVIHPAQIFVAVLGAS
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
NLTFAHASFSQQLPDWIDGQVRALTFYGGVTKAIVCDNLKSGVAKALWFEPTLTATFAAM
CCEEEECCHHHHCCHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AEHYDTTILPTRSRKPRDKGRVEGAVLIVERWILARLRNRTFFSLAALNTAIAELLEDLN
HHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
NRTMRHVGKSRRELFEEIERPALKPLPAIPFEYAEWKSAKVHPDYHVEVDKTFYSVPHRL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEHHHHHHCCHHH
IGCTLQVRLTHRVVEIFHDHQRVASHVRRSQRSGHVTVNDHMPKAHQRYANTTPANLIGR
HCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHCCCCCHHHHHH
ATQIGPNAAILVERMMRDRPHPEQGYRSAMGILSLAPRYGSQRLEAACERALTINAITYS
HHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEHHHHH
SVASILKSGLDRERPQAEHAAPTPAHTNIRGRSYYQ
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRRKQARRTTVRDIRTILRLTHEEGLSVREIAERLKIGKSSVSTYLLRSREAGLSWPLP
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC
IGADEDAKLERRLFGRAGRPPRDLSEPDWALVVRELKRKGVTLTLLWQEYRASHPDGYGF
CCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCH
TWFCEQVAAFRQRTSVAFRNRHAAGAVMQTDYAGPTVPVIDPATGVIHPAQIFVAVLGAS
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
NLTFAHASFSQQLPDWIDGQVRALTFYGGVTKAIVCDNLKSGVAKALWFEPTLTATFAAM
CCEEEECCHHHHCCHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AEHYDTTILPTRSRKPRDKGRVEGAVLIVERWILARLRNRTFFSLAALNTAIAELLEDLN
HHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
NRTMRHVGKSRRELFEEIERPALKPLPAIPFEYAEWKSAKVHPDYHVEVDKTFYSVPHRL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEHHHHHHCCHHH
IGCTLQVRLTHRVVEIFHDHQRVASHVRRSQRSGHVTVNDHMPKAHQRYANTTPANLIGR
HCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHCCCCCHHHHHH
ATQIGPNAAILVERMMRDRPHPEQGYRSAMGILSLAPRYGSQRLEAACERALTINAITYS
HHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEHHHHH
SVASILKSGLDRERPQAEHAAPTPAHTNIRGRSYYQ
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424