Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 16519811

GI number: 16519811

Start: 382212

End: 383180

Strand: Direct

Name: Not Available

Synonym: NGR_a02940

Alternate gene names: NA

Gene position: 382212-383180 (Clockwise)

Preceding gene: 16519813

Following gene: 16519810

Centisome position: 71.29

GC content: 51.19

Gene sequence:

>969_bases
ATGAGGCATGCGATCGCGTTGACAGCAGCAGCGGCTTTGTTGCCGAACTGCGCTATCAGGCCACTTCCGGAAGATGTCAC
CCGATTGAATACTTATGCGATCGTCACCAGAATTCGGTGCGAAGCGCGAGATGCCGTCCTGTCCGAACTGCTTGAGTACT
TAAAAAACAGTCGCAGCAACGTATCTCCGGAAATTGTCACCCAGATAGAGGAAGACCCAAACACAATCGCGAACTTCGAT
CGCAGCCGACTTCCAAATGCAACACGAAAGAAGATCGATCTCTACGCAAATGCTGCGATTGTCTATGACTTCGAGTTCGA
TATGTCGCAGCACAGCAGAAACAGTCTTGGCGCTACTCTGAACGATACCTGGAGCAGTGGAATATTCAACTTGGGTGTTT
CCGGTGCCCACGAGCGAACGCGCCGAAATCAGCGGCGTTTTAGAGTCGAGGATAATTTCTACAAGCTATTCACGGATCCC
CCGAGGTGCGAGCCCTATTCCGAGAACGGAAAGTTCAAGCGCGAAAAAAATTACGCCTATCCCATAACCGGATACATCGG
GCTTCAAGAAATAATCGATACGTTTTGGCGCCTGAATGAAGACCATATTCTTGGCAGCACTGATAGTGGACAGCCAAAGG
TCAACAAACTTGCCGATGAGATTCAGTTCACGACTAAAAACAGCTTCTCGGCCACTCCCAGTGCCGAACTGGATCCCGCT
AACCATTTGAAGATCGTGGCTGTTGACGCAGAGTCATCCCATTGGAGACAAGACATACACACCGTCACCATTGGCGTCGC
CGTGCAGGACGAGGAGGAAGAGCCTCGCGACGAACGCAGACCAAGGCGACGTCTGGGCAAGGCGCAAAGCGCGATCAAGA
ACGCGAACGATGCAATCAATGAGCTGCAACTGCGCAATATCCAGATACTCAACAGAAGCGACCTGCAACAACTACTCCCA
AACTTGTGA

Upstream 100 bases:

>100_bases
GACAATTTAGAGGGGACTAATGAGGGAATTATGCGGCAAAAGCTAGCGCCGCCGATTCTCAGCGTTGACCAATTCAGCGG
GTCTTTGTCGGGGGGCACTG

Downstream 100 bases:

>100_bases
AACATCGGCCTGACAGGAGGGTAATTCTCATGGGAAGCGCTTGGCCGGCAGAGATCCGAAAAATCGCGAAAATTTCTAAG
CGATTGTTGGGGGCCACAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MRHAIALTAAAALLPNCAIRPLPEDVTRLNTYAIVTRIRCEARDAVLSELLEYLKNSRSNVSPEIVTQIEEDPNTIANFD
RSRLPNATRKKIDLYANAAIVYDFEFDMSQHSRNSLGATLNDTWSSGIFNLGVSGAHERTRRNQRRFRVEDNFYKLFTDP
PRCEPYSENGKFKREKNYAYPITGYIGLQEIIDTFWRLNEDHILGSTDSGQPKVNKLADEIQFTTKNSFSATPSAELDPA
NHLKIVAVDAESSHWRQDIHTVTIGVAVQDEEEEPRDERRPRRRLGKAQSAIKNANDAINELQLRNIQILNRSDLQQLLP
NL

Sequences:

>Translated_322_residues
MRHAIALTAAAALLPNCAIRPLPEDVTRLNTYAIVTRIRCEARDAVLSELLEYLKNSRSNVSPEIVTQIEEDPNTIANFD
RSRLPNATRKKIDLYANAAIVYDFEFDMSQHSRNSLGATLNDTWSSGIFNLGVSGAHERTRRNQRRFRVEDNFYKLFTDP
PRCEPYSENGKFKREKNYAYPITGYIGLQEIIDTFWRLNEDHILGSTDSGQPKVNKLADEIQFTTKNSFSATPSAELDPA
NHLKIVAVDAESSHWRQDIHTVTIGVAVQDEEEEPRDERRPRRRLGKAQSAIKNANDAINELQLRNIQILNRSDLQQLLP
NL
>Mature_322_residues
MRHAIALTAAAALLPNCAIRPLPEDVTRLNTYAIVTRIRCEARDAVLSELLEYLKNSRSNVSPEIVTQIEEDPNTIANFD
RSRLPNATRKKIDLYANAAIVYDFEFDMSQHSRNSLGATLNDTWSSGIFNLGVSGAHERTRRNQRRFRVEDNFYKLFTDP
PRCEPYSENGKFKREKNYAYPITGYIGLQEIIDTFWRLNEDHILGSTDSGQPKVNKLADEIQFTTKNSFSATPSAELDPA
NHLKIVAVDAESSHWRQDIHTVTIGVAVQDEEEEPRDERRPRRRLGKAQSAIKNANDAINELQLRNIQILNRSDLQQLLP
NL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4KA_RHISN (P55521)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443931.1
- GeneID:   962343
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02940
- ProtClustDB:   CLSK563535

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36690; Mature: 36690

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHAIALTAAAALLPNCAIRPLPEDVTRLNTYAIVTRIRCEARDAVLSELLEYLKNSRSN
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VSPEIVTQIEEDPNTIANFDRSRLPNATRKKIDLYANAAIVYDFEFDMSQHSRNSLGATL
CCHHHHHHHHCCCHHHHHCHHHHCCCHHHHHEEEEECEEEEEEEECCCHHHCHHHCCCCC
NDTWSSGIFNLGVSGAHERTRRNQRRFRVEDNFYKLFTDPPRCEPYSENGKFKREKNYAY
CCCCCCCCEECCCCCHHHHHHHHHHCEEECCCEEEEECCCCCCCCCCCCCCEEECCCCCC
PITGYIGLQEIIDTFWRLNEDHILGSTDSGQPKVNKLADEIQFTTKNSFSATPSAELDPA
CEEHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCC
NHLKIVAVDAESSHWRQDIHTVTIGVAVQDEEEEPRDERRPRRRLGKAQSAIKNANDAIN
CCEEEEEEECCCHHHHHCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ELQLRNIQILNRSDLQQLLPNL
HHHHHHEEEECHHHHHHHCCCC
>Mature Secondary Structure
MRHAIALTAAAALLPNCAIRPLPEDVTRLNTYAIVTRIRCEARDAVLSELLEYLKNSRSN
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VSPEIVTQIEEDPNTIANFDRSRLPNATRKKIDLYANAAIVYDFEFDMSQHSRNSLGATL
CCHHHHHHHHCCCHHHHHCHHHHCCCHHHHHEEEEECEEEEEEEECCCHHHCHHHCCCCC
NDTWSSGIFNLGVSGAHERTRRNQRRFRVEDNFYKLFTDPPRCEPYSENGKFKREKNYAY
CCCCCCCCEECCCCCHHHHHHHHHHCEEECCCEEEEECCCCCCCCCCCCCCEEECCCCCC
PITGYIGLQEIIDTFWRLNEDHILGSTDSGQPKVNKLADEIQFTTKNSFSATPSAELDPA
CEEHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCC
NHLKIVAVDAESSHWRQDIHTVTIGVAVQDEEEEPRDERRPRRRLGKAQSAIKNANDAIN
CCEEEEEEECCCHHHHHCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ELQLRNIQILNRSDLQQLLPNL
HHHHHHEEEECHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424