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Identifier: 16519793

GI number: 16519793

Start: 402041

End: 402394

Strand: Reverse

Name: Not Available

Synonym: NGR_a03130

Alternate gene names: NA

Gene position: 402394-402041 (Counterclockwise)

Preceding gene: 16519792

Following gene: 16519794

Centisome position: 75.05

GC content: 61.02

Gene sequence:

>354_bases
GTGATCGGGCCATCGAGGGGGCTGAGGATCATGGTGGCGACCCAGCCGGTCGATTTCCGGCGTGGCATGAACGGGCTCGT
CGCACTGGTGGGGTCGGCCCTTTTGGCCGACCCCTATTGCGGCGATATTTTCGTCTTCCGGGCCAAGCGTTGCGACCGGC
TGCGCTGCATTTATTGGGACGGGTCAGGCATGATCCTTTCGACGAAGTGGCTGGAAAGCGGGAAGTTCATCTTCCCGCCG
GTCAAGGATGGCGCTCTTCACATGTCACCCGAAGAGTTCAGTCTGCTTGTTGCGGGCCTGGACTGGACACGCGTCAAGCG
CAAGCCCGTGAAGCGACCAACGAAAGTGGCTTGA

Upstream 100 bases:

>100_bases
GTCGGATCGAGATCGAGCTTGGCGGTGGGCGGATGATCGTGACAGGCAATGTCTCTCCCGACTTGGCGCATGCTGTGGTG
ATGGCGCTGCGGGGTAGACG

Downstream 100 bases:

>100_bases
TCTCATTGTATTTCCTTGCAGATTCACGCCCGTGTGGTAGCTTTCGGCATGTCTCTTCGCCACGAACAGCTCCCGCAAGA
TGTCGAGCAACTGAGCAGGA

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MIGPSRGLRIMVATQPVDFRRGMNGLVALVGSALLADPYCGDIFVFRAKRCDRLRCIYWDGSGMILSTKWLESGKFIFPP
VKDGALHMSPEEFSLLVAGLDWTRVKRKPVKRPTKVA

Sequences:

>Translated_117_residues
MIGPSRGLRIMVATQPVDFRRGMNGLVALVGSALLADPYCGDIFVFRAKRCDRLRCIYWDGSGMILSTKWLESGKFIFPP
VKDGALHMSPEEFSLLVAGLDWTRVKRKPVKRPTKVA
>Mature_117_residues
MIGPSRGLRIMVATQPVDFRRGMNGLVALVGSALLADPYCGDIFVFRAKRCDRLRCIYWDGSGMILSTKWLESGKFIFPP
VKDGALHMSPEEFSLLVAGLDWTRVKRKPVKRPTKVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 34 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4JC_RHISN (P55503)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443913.1
- GeneID:   962587
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a03130
- HOGENOM:   HBG702448
- ProtClustDB:   CLSK886512
- InterPro:   IPR008878

Pfam domain/function: PF05717 Transposase_34

EC number: NA

Molecular weight: Translated: 13083; Mature: 13083

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGPSRGLRIMVATQPVDFRRGMNGLVALVGSALLADPYCGDIFVFRAKRCDRLRCIYWD
CCCCCCCCEEEEEECCCHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEC
GSGMILSTKWLESGKFIFPPVKDGALHMSPEEFSLLVAGLDWTRVKRKPVKRPTKVA
CCCEEEEEEECCCCCEECCCCCCCEEEECCHHEEEEEECCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MIGPSRGLRIMVATQPVDFRRGMNGLVALVGSALLADPYCGDIFVFRAKRCDRLRCIYWD
CCCCCCCCEEEEEECCCHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEC
GSGMILSTKWLESGKFIFPPVKDGALHMSPEEFSLLVAGLDWTRVKRKPVKRPTKVA
CCCEEEEEEECCCCCEECCCCCCCEEEECCHHEEEEEECCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424