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The map label for this gene is nopM

Identifier: 16519742

GI number: 16519742

Start: 466644

End: 468284

Strand: Reverse

Name: nopM

Synonym: NGR_a03640

Alternate gene names: NA

Gene position: 468284-466644 (Counterclockwise)

Preceding gene: 16519741

Following gene: 16519747

Centisome position: 87.34

GC content: 61.91

Gene sequence:

>1641_bases
ATGAATGTACAACGGCCCGGACTTGCCGTGGGCCCCCTTTTCGAGAATCCCGAATCAGAAAGTTCAGAACCAGGGTCTCC
GGCCGCCGCCGCACGTTGGGTCGAAGCCTCTACGGAGGCGGAGGCGTCCGCCGCCTCCTCGTCGCAAGGCCAGATCGTGG
CAGCCCCGACCGCCGAAGAACGGCCATGGGAGGGTCGTCCGCAAGAGGCGGTAAGTCGAACGAGGGCCTGGCGGGAGGCG
GGCGATGTCGATGAGCCGCTGGATCTGTCGTTCCTATCCCTGACCCCCTTGTCCATCCCCCTCGTATCCGGGCTCCGGCG
CCTGAACGTCAACAACAATCAGCTAGGGGATCTGCCAGACACCCTCCCGGGAACGCTTCTGGAGCTGGAGGCCAGCGAGA
ACCGGCTGACCCGCCTGCCCGACCTTCCTGCCGGGCTCCAGAGGCTGAACGTCGAAAACAACCGGCTGACCAATCTCCCC
GAGCCCCTCCCGGCCGCGCTCGAGTGGCTGGGTGCTGGCTACAACCAGCTAACCCGCCTGCCCGAGATGATTCCCCCCGA
GCTTATATGGCTGGGCGCCAGAAACAATCAGCTGACCAGCGTGCCCGAAAGCCTGCTGACGCAGCTAGGCCAATGGTCTA
GCATTGATTTGGAAAATAATCCGCTGCCGCATGGGGTACAAACAAACTTGGTGACAGCCATGCATGCCGCGGGTTACGCA
GGACCGCAGATCTTTTTGCCTATGGGACCGGTGGAACTTGCACGACGGCCCCTTCACGAGGTTGTCGCGGATTGGCTCGA
GGGGGATTTGGAAACGGTGGCCGCCTGGCGGGGCTTCGCCAACGAACAAGGTGCCCGGGATTATGCACATTTCCTCGACC
GGCTCCGTACCACCGTGAACTATGGCAATGATGCGTTCCGGCAGGCGGTGGCCATAGGTCTGCGGCAGGCAGTGGCCAGG
CCGCAATTGCGCGCACAGTATTTTGAGCAGGCTTCCGGAGCTAGCGATAGCTGTGAGGATCGCATTACTTTGACCTGGAA
TGGAATGCAGACCGCACTTCTGATCGCTGATGTAGAGGACGGGGTCTATGACGGGTCGCTCCACCAGCTTCTCCAGCACG
GCCGTGTCATGTTCCGTTTGGAGGCACTGGACGGGATCGCGCGCGAGACGGTCAACTCGCTTCGACGTACCGATCCGGAC
GCCGACATCGACGAGATCGAGGTCTATCTTGCCTACCAGACACAGCTGCGCGACACCCTGGAGCTGCGGCACGTCGCCCC
AGACATGCGCTTCTTGAACGTCTCTCACGTTACCGAGGAGGACGTTGCCAGAGCTGCCAGTTCCGTGCGGGAACTTGAGG
CGAGGGGATTCGGCGAGTATGTGGCAACGCGCTGGCAACCTTGGGAAAGAGTCATGAGGCGCATCGCCCCCGCAAGCCAT
GCAGCGATGCAGGAGCAGCTCATCGAAGCGATGGGAGAGGAGTTCAGAAGCCGCTTGGACGAAAAGCTCGCCGAGCACGG
CCTGACGGGTGATGCCGATGCCGAACGGGTATTCGGAGCCGAGATCCTCAACGACATCGCCCGCAGGATCAAAGGCGAGA
CAATGGAGAAGGTGCTTCGGGGTCGCGGTCTTGAGCTGTGA

Upstream 100 bases:

>100_bases
TGCTTCGGCAGTGGTCGGTGATCACCGTCGATTTTGAGAGCTCCTGCTTCTCAAAGCACTCGGCGCAATCCTTCATATTG
TTACCGAGGAGACAATATCG

Downstream 100 bases:

>100_bases
AGCGGCCGTCCATGCGGTGGCTGTCAATTGCTGTTCCTGCGGCGGTCGCCCGCGTCTATTGCGCGACCGAGATCAGGTTA
TGCCAGGCCGGTAGCAACGG

Product: nodulation protein NopM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 546

Protein sequence:

>546_residues
MNVQRPGLAVGPLFENPESESSEPGSPAAAARWVEASTEAEASAASSSQGQIVAAPTAEERPWEGRPQEAVSRTRAWREA
GDVDEPLDLSFLSLTPLSIPLVSGLRRLNVNNNQLGDLPDTLPGTLLELEASENRLTRLPDLPAGLQRLNVENNRLTNLP
EPLPAALEWLGAGYNQLTRLPEMIPPELIWLGARNNQLTSVPESLLTQLGQWSSIDLENNPLPHGVQTNLVTAMHAAGYA
GPQIFLPMGPVELARRPLHEVVADWLEGDLETVAAWRGFANEQGARDYAHFLDRLRTTVNYGNDAFRQAVAIGLRQAVAR
PQLRAQYFEQASGASDSCEDRITLTWNGMQTALLIADVEDGVYDGSLHQLLQHGRVMFRLEALDGIARETVNSLRRTDPD
ADIDEIEVYLAYQTQLRDTLELRHVAPDMRFLNVSHVTEEDVARAASSVRELEARGFGEYVATRWQPWERVMRRIAPASH
AAMQEQLIEAMGEEFRSRLDEKLAEHGLTGDADAERVFGAEILNDIARRIKGETMEKVLRGRGLEL

Sequences:

>Translated_546_residues
MNVQRPGLAVGPLFENPESESSEPGSPAAAARWVEASTEAEASAASSSQGQIVAAPTAEERPWEGRPQEAVSRTRAWREA
GDVDEPLDLSFLSLTPLSIPLVSGLRRLNVNNNQLGDLPDTLPGTLLELEASENRLTRLPDLPAGLQRLNVENNRLTNLP
EPLPAALEWLGAGYNQLTRLPEMIPPELIWLGARNNQLTSVPESLLTQLGQWSSIDLENNPLPHGVQTNLVTAMHAAGYA
GPQIFLPMGPVELARRPLHEVVADWLEGDLETVAAWRGFANEQGARDYAHFLDRLRTTVNYGNDAFRQAVAIGLRQAVAR
PQLRAQYFEQASGASDSCEDRITLTWNGMQTALLIADVEDGVYDGSLHQLLQHGRVMFRLEALDGIARETVNSLRRTDPD
ADIDEIEVYLAYQTQLRDTLELRHVAPDMRFLNVSHVTEEDVARAASSVRELEARGFGEYVATRWQPWERVMRRIAPASH
AAMQEQLIEAMGEEFRSRLDEKLAEHGLTGDADAERVFGAEILNDIARRIKGETMEKVLRGRGLEL
>Mature_546_residues
MNVQRPGLAVGPLFENPESESSEPGSPAAAARWVEASTEAEASAASSSQGQIVAAPTAEERPWEGRPQEAVSRTRAWREA
GDVDEPLDLSFLSLTPLSIPLVSGLRRLNVNNNQLGDLPDTLPGTLLELEASENRLTRLPDLPAGLQRLNVENNRLTNLP
EPLPAALEWLGAGYNQLTRLPEMIPPELIWLGARNNQLTSVPESLLTQLGQWSSIDLENNPLPHGVQTNLVTAMHAAGYA
GPQIFLPMGPVELARRPLHEVVADWLEGDLETVAAWRGFANEQGARDYAHFLDRLRTTVNYGNDAFRQAVAIGLRQAVAR
PQLRAQYFEQASGASDSCEDRITLTWNGMQTALLIADVEDGVYDGSLHQLLQHGRVMFRLEALDGIARETVNSLRRTDPD
ADIDEIEVYLAYQTQLRDTLELRHVAPDMRFLNVSHVTEEDVARAASSVRELEARGFGEYVATRWQPWERVMRRIAPASH
AAMQEQLIEAMGEEFRSRLDEKLAEHGLTGDADAERVFGAEILNDIARRIKGETMEKVLRGRGLEL

Specific function: Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is an E3 ubiquitin ligase that interferes with host's ubiquitination pathway

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Secreted. Host cytoplasm (By similarity). Note=Secreted via type III secretion system (TTSS), and delivered into the host cytoplasm (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 LRR (leucine-rich) repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4FR_RHISN (P55456)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443862.1
- ProteinModelPortal:   P55456
- GeneID:   962318
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a03640
- HOGENOM:   HBG673275
- ProtClustDB:   CLSK516084
- InterPro:   IPR001611

Pfam domain/function: PF00560 LRR_1

EC number: NA

Molecular weight: Translated: 60461; Mature: 60461

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: ACT_SITE 338-338

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVQRPGLAVGPLFENPESESSEPGSPAAAARWVEASTEAEASAASSSQGQIVAAPTAEE
CCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCEEEECCCCCC
RPWEGRPQEAVSRTRAWREAGDVDEPLDLSFLSLTPLSIPLVSGLRRLNVNNNQLGDLPD
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCC
TLPGTLLELEASENRLTRLPDLPAGLQRLNVENNRLTNLPEPLPAALEWLGAGYNQLTRL
CCCCCEEEEECCCCHHHCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHC
PEMIPPELIWLGARNNQLTSVPESLLTQLGQWSSIDLENNPLPHGVQTNLVTAMHAAGYA
HHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
GPQIFLPMGPVELARRPLHEVVADWLEGDLETVAAWRGFANEQGARDYAHFLDRLRTTVN
CCEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
YGNDAFRQAVAIGLRQAVARPQLRAQYFEQASGASDSCEDRITLTWNGMQTALLIADVED
CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEEECCC
GVYDGSLHQLLQHGRVMFRLEALDGIARETVNSLRRTDPDADIDEIEVYLAYQTQLRDTL
CCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEEHHHHHHHHH
ELRHVAPDMRFLNVSHVTEEDVARAASSVRELEARGFGEYVATRWQPWERVMRRIAPASH
HHHHHCCCCCEEEHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCHHH
AAMQEQLIEAMGEEFRSRLDEKLAEHGLTGDADAERVFGAEILNDIARRIKGETMEKVLR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
GRGLEL
CCCCCC
>Mature Secondary Structure
MNVQRPGLAVGPLFENPESESSEPGSPAAAARWVEASTEAEASAASSSQGQIVAAPTAEE
CCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCEEEECCCCCC
RPWEGRPQEAVSRTRAWREAGDVDEPLDLSFLSLTPLSIPLVSGLRRLNVNNNQLGDLPD
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCC
TLPGTLLELEASENRLTRLPDLPAGLQRLNVENNRLTNLPEPLPAALEWLGAGYNQLTRL
CCCCCEEEEECCCCHHHCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHC
PEMIPPELIWLGARNNQLTSVPESLLTQLGQWSSIDLENNPLPHGVQTNLVTAMHAAGYA
HHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
GPQIFLPMGPVELARRPLHEVVADWLEGDLETVAAWRGFANEQGARDYAHFLDRLRTTVN
CCEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
YGNDAFRQAVAIGLRQAVARPQLRAQYFEQASGASDSCEDRITLTWNGMQTALLIADVED
CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEEECCC
GVYDGSLHQLLQHGRVMFRLEALDGIARETVNSLRRTDPDADIDEIEVYLAYQTQLRDTL
CCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEEHHHHHHHHH
ELRHVAPDMRFLNVSHVTEEDVARAASSVRELEARGFGEYVATRWQPWERVMRRIAPASH
HHHHHCCCCCEEEHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCHHH
AAMQEQLIEAMGEEFRSRLDEKLAEHGLTGDADAERVFGAEILNDIARRIKGETMEKVLR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
GRGLEL
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424