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The map label for this gene is trbH

Identifier: 16519695

GI number: 16519695

Start: 526611

End: 527057

Strand: Reverse

Name: trbH

Synonym: NGR_a04110

Alternate gene names: 16519695

Gene position: 527057-526611 (Counterclockwise)

Preceding gene: 16519694

Following gene: 16519696

Centisome position: 98.3

GC content: 63.09

Gene sequence:

>447_bases
ATGCGGAAGCTTCTGATCTCCTTTGTTACGGTGGCTATTCTTTCCGGCTGCCAAACGGCCGAGGACGGGCTGACGACCAG
TTCCACGCCAACCACCGTCACCGGGCCCGCGGCGAGCGCGATTGCCGGCGATATGGCAAGCCGGCTCGCCGAGCAGATCG
GCCCGTCTGCGACGATGACCATCAAGATCGAAAAAGACTCGTCGGATTTCGCGAGCGCGCTCGAGGCGGCGCTGAAAGGC
TGGGGCTATACGGTCGTGACTGATGGCAAGGTCGGCAGGGTCGGCAAGGACGTGAAACTGGTCGAGCTCGGCTATTCGAT
CGACGGTGTTGACGGTCAGGTGCTCGCGCGACTTTCGACGCCCTCTATCGCGCTTGGCCGGGCCTACACGGCAACGGCAG
CGGGTGCTGTGCCGGCAAGTCCGCTTTCCATCATGCAGCGCAACTGA

Upstream 100 bases:

>100_bases
TGACATGATGATCGTGGACTACGCGGTCGACAAGGCGATCCTCGTCTCCGGCGTCGGCTGGCGGCAGCAGAAGATCACTA
TTCGGCGGGGAGGCTGAACG

Downstream 100 bases:

>100_bases
CGGAGACAGATATGGTCCAGTCTCTGCGGCTTGGTGCCGCCAACGAGGCCGAAGATCAGAACGGCATGCGCCGTCTCAAT
CGCCTGCCGATCATCGTCGC

Product: conjugal transfer protein TrbH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MRKLLISFVTVAILSGCQTAEDGLTTSSTPTTVTGPAASAIAGDMASRLAEQIGPSATMTIKIEKDSSDFASALEAALKG
WGYTVVTDGKVGRVGKDVKLVELGYSIDGVDGQVLARLSTPSIALGRAYTATAAGAVPASPLSIMQRN

Sequences:

>Translated_148_residues
MRKLLISFVTVAILSGCQTAEDGLTTSSTPTTVTGPAASAIAGDMASRLAEQIGPSATMTIKIEKDSSDFASALEAALKG
WGYTVVTDGKVGRVGKDVKLVELGYSIDGVDGQVLARLSTPSIALGRAYTATAAGAVPASPLSIMQRN
>Mature_148_residues
MRKLLISFVTVAILSGCQTAEDGLTTSSTPTTVTGPAASAIAGDMASRLAEQIGPSATMTIKIEKDSSDFASALEAALKG
WGYTVVTDGKVGRVGKDVKLVELGYSIDGVDGQVLARLSTPSIALGRAYTATAAGAVPASPLSIMQRN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens Ti plasmid trbH

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRBH_RHISN (P55405)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443815.1
- GeneID:   962275
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a04110
- HOGENOM:   HBG301672
- ProtClustDB:   PRK13835
- GO:   GO:0000746
- InterPro:   IPR010837

Pfam domain/function: PF07283 TrbH

EC number: NA

Molecular weight: Translated: 15076; Mature: 15076

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLLISFVTVAILSGCQTAEDGLTTSSTPTTVTGPAASAIAGDMASRLAEQIGPSATMT
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCEEEE
IKIEKDSSDFASALEAALKGWGYTVVTDGKVGRVGKDVKLVELGYSIDGVDGQVLARLST
EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEECC
PSIALGRAYTATAAGAVPASPLSIMQRN
CCEECCCCCHHHCCCCCCCCCHHHCCCC
>Mature Secondary Structure
MRKLLISFVTVAILSGCQTAEDGLTTSSTPTTVTGPAASAIAGDMASRLAEQIGPSATMT
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCEEEE
IKIEKDSSDFASALEAALKGWGYTVVTDGKVGRVGKDVKLVELGYSIDGVDGQVLARLST
EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEECC
PSIALGRAYTATAAGAVPASPLSIMQRN
CCEECCCCCHHHCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424