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The map label for this gene is ygdK [C]

Identifier: 16273207

GI number: 16273207

Start: 1373964

End: 1374344

Strand: Reverse

Name: ygdK [C]

Synonym: HI1293

Alternate gene names: 16273207

Gene position: 1374344-1373964 (Counterclockwise)

Preceding gene: 30995438

Following gene: 16273206

Centisome position: 75.1

GC content: 35.17

Gene sequence:

>381_bases
ATGATAGAACAATTAAAACAAGCTAAAAATTGGGAAGATCGCTATCGCCTGATTATTCAAGCAGGCAAAAATTTACCTCG
CCCAAGCGATAATGAACTCGCTCAAATGCAACCTATTACTGGCTGCGAAGCACAAATGTGGTTTCAAATTATGCCTAAAA
ATGACCGCACTTTTCAATTCAGCGGATTTAGCGAAGCCAGAATTATGAATGGCTTACTTTGGATTTTATTCAATCAAATC
AATGGCAAAACAGCGGATGAATTGAATACATTTGATATTACTGTATTTTTTAGCGAACTCGGCATTTCACAACGTTTAAG
TGAAATGCGTTTAAACGGCTTAAACCAAATCGGACAGCAATTAAAAAATTTATGTATTTAA

Upstream 100 bases:

>100_bases
GCGAACGCACCACATTACGCCTGTCTTTTGCCCCTTATAATACACAAGAAGATGTAGAGGCATTCTTCACCGCCTTAGAT
AAAGCACTGGATTTATTACA

Downstream 100 bases:

>100_bases
TCGAAACCTATTTTCGCCTGACTGCGCTCGAAAATAATATTGAATCACAAAGTCGTTTACTCAATGCAGTGATCGATCAA
TGGCGGTATAACGGGCAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MIEQLKQAKNWEDRYRLIIQAGKNLPRPSDNELAQMQPITGCEAQMWFQIMPKNDRTFQFSGFSEARIMNGLLWILFNQI
NGKTADELNTFDITVFFSELGISQRLSEMRLNGLNQIGQQLKNLCI

Sequences:

>Translated_126_residues
MIEQLKQAKNWEDRYRLIIQAGKNLPRPSDNELAQMQPITGCEAQMWFQIMPKNDRTFQFSGFSEARIMNGLLWILFNQI
NGKTADELNTFDITVFFSELGISQRLSEMRLNGLNQIGQQLKNLCI
>Mature_126_residues
MIEQLKQAKNWEDRYRLIIQAGKNLPRPSDNELAQMQPITGCEAQMWFQIMPKNDRTFQFSGFSEARIMNGLLWILFNQI
NGKTADELNTFDITVFFSELGISQRLSEMRLNGLNQIGQQLKNLCI

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family

Homologues:

Organism=Escherichia coli, GI1789176, Length=111, Percent_Identity=39.6396396396396, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1787969, Length=108, Percent_Identity=28.7037037037037, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1293_HAEIN (P44156)

Other databases:

- EMBL:   L42023
- PIR:   T09422
- RefSeq:   NP_439445.1
- ProteinModelPortal:   P44156
- SMR:   P44156
- GeneID:   950226
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1293
- NMPDR:   fig|71421.1.peg.1233
- TIGR:   HI_1293
- HOGENOM:   HBG608886
- OMA:   DARIVKG
- ProtClustDB:   CLSK870285
- BioCyc:   HINF71421:HI_1293-MONOMER
- InterPro:   IPR003808

Pfam domain/function: PF02657 SufE

EC number: NA

Molecular weight: Translated: 14643; Mature: 14643

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQLKQAKNWEDRYRLIIQAGKNLPRPSDNELAQMQPITGCEAQMWFQIMPKNDRTFQF
CCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCEEEE
SGFSEARIMNGLLWILFNQINGKTADELNTFDITVFFSELGISQRLSEMRLNGLNQIGQQ
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHHHHHHHH
LKNLCI
HHHHCC
>Mature Secondary Structure
MIEQLKQAKNWEDRYRLIIQAGKNLPRPSDNELAQMQPITGCEAQMWFQIMPKNDRTFQF
CCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCEEEE
SGFSEARIMNGLLWILFNQINGKTADELNTFDITVFFSELGISQRLSEMRLNGLNQIGQQ
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHHHHHHHH
LKNLCI
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800