Click here to switch to the map view.

The map label for this gene is ygcF [C]

Identifier: 16273111

GI number: 16273111

Start: 1256516

End: 1257151

Strand: Reverse

Name: ygcF [C]

Synonym: HI1189

Alternate gene names: 16273111

Gene position: 1257151-1256516 (Counterclockwise)

Preceding gene: 16273112

Following gene: 16273110

Centisome position: 68.69

GC content: 33.65

Gene sequence:

>636_bases
ATGTTGATGGAAAAATATCATGATTTTGAACCGAACTTTAACATAGTCGAAATTTTTGAAAGTCTGCAAGGGGAGGGCTT
CAATACGGGAATGCCAAGTGTTTTTGTACGATTTGGTAAATGCAATCTAGACTGTCCTTGGTGTGATACACCTTATAATA
ATTTTAAACGCTGGTCTGTATCACAAATTCTAGAAAAAGTGCGGTCATTTTCGTCAAAGAATATTATCATCACAGGTGGT
GAGCCAACAATTGTACCAAAAATTGAATACTTACTTGAGCAATTTAAATCAGATGGCTATTTTCTTGCAATTGAAACCAA
TGGTCTAAAAGCAATTCCTGCACAAATAGATTATATTGCGACGAGTCCTAAGAGCCTTTATGCTCATAAGTATGAAAAGC
GTTGCATTCCATTTGCAAATGAAGTACGTATTGTAATGGACAGTAATATGCCATCATTTTGTGAATTGATCGAGCAAAAA
ATAAAAGCAAAGAATTACTATCTTTCACCTTGTGAAATTGATGGGAAAATGAATTTACTTGAGACTATCACTTTACTTGG
TCAATTGAATCAACGTTCAAATAAACCTAAATGGCAGCTAAGTTTACAAACACATAAATTGATTGGTATTGAGTAA

Upstream 100 bases:

>100_bases
TCGTTTTATTTTTAATCGTTTAAAACATGATGAACAACTGTCCATATCATCCATTCGTTTATGGGAAACCCCAACTTCAT
TTTGCGAGTATCAGGAGTAA

Downstream 100 bases:

>100_bases
TAGAAGGAAATATTATTTTTTGATCAGTATATAATTTAGTATATGACGTTTTCTACTTTAGAGAATGATCATAATGAAAC
TTGGATAGCACACTTCTCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MLMEKYHDFEPNFNIVEIFESLQGEGFNTGMPSVFVRFGKCNLDCPWCDTPYNNFKRWSVSQILEKVRSFSSKNIIITGG
EPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQK
IKAKNYYLSPCEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE

Sequences:

>Translated_211_residues
MLMEKYHDFEPNFNIVEIFESLQGEGFNTGMPSVFVRFGKCNLDCPWCDTPYNNFKRWSVSQILEKVRSFSSKNIIITGG
EPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQK
IKAKNYYLSPCEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE
>Mature_211_residues
MLMEKYHDFEPNFNIVEIFESLQGEGFNTGMPSVFVRFGKCNLDCPWCDTPYNNFKRWSVSQILEKVRSFSSKNIIITGG
EPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQK
IKAKNYYLSPCEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGIE

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily

Homologues:

Organism=Escherichia coli, GI1789139, Length=244, Percent_Identity=25.4098360655738, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1189_HAEIN (P45097)

Other databases:

- EMBL:   L42023
- PIR:   I64188
- RefSeq:   NP_439345.1
- ProteinModelPortal:   P45097
- SMR:   P45097
- GeneID:   950138
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1189
- TIGR:   HI_1189
- HOGENOM:   HBG507714
- OMA:   CVSPKMG
- ProtClustDB:   CLSK870003
- BioCyc:   HINF71421:HI_1189-MONOMER
- InterPro:   IPR013785
- InterPro:   IPR007197
- Gene3D:   G3DSA:3.20.20.70

Pfam domain/function: PF04055 Radical_SAM

EC number: NA

Molecular weight: Translated: 24337; Mature: 24337

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMEKYHDFEPNFNIVEIFESLQGEGFNTGMPSVFVRFGKCNLDCPWCDTPYNNFKRWSV
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCH
SQILEKVRSFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIA
HHHHHHHHCCCCCCEEEECCCCCEEHHHHHHHHHHCCCCEEEEEECCCCEECCCEEEEEE
TSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSPCEIDGKMNLL
CCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCEECCCCCCCCCHHHH
ETITLLGQLNQRSNKPKWQLSLQTHKLIGIE
HHHHHHHHHHHCCCCCCEEEEEEEEEEECCC
>Mature Secondary Structure
MLMEKYHDFEPNFNIVEIFESLQGEGFNTGMPSVFVRFGKCNLDCPWCDTPYNNFKRWSV
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCH
SQILEKVRSFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIA
HHHHHHHHCCCCCCEEEECCCCCEEHHHHHHHHHHCCCCEEEEEECCCCEECCCEEEEEE
TSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSPCEIDGKMNLL
CCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCEECCCCCCCCCHHHH
ETITLLGQLNQRSNKPKWQLSLQTHKLIGIE
HHHHHHHHHHHCCCCCCEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800