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The map label for this gene is lsrB [H]

Identifier: 162149492

GI number: 162149492

Start: 3814808

End: 3815815

Strand: Direct

Name: lsrB [H]

Synonym: GDI_3730

Alternate gene names: 162149492

Gene position: 3814808-3815815 (Clockwise)

Preceding gene: 162149491

Following gene: 162149493

Centisome position: 96.72

GC content: 63.59

Gene sequence:

>1008_bases
GTGCCAGCCATAACCCGACGTGCGGCCCTGATCGGCGCGGTGCTGCTGAGCGGAATGAATCCGGTTTCGGCGGTCCATGC
GCAGGACAGCGGTTTCCGGCTGATGATGACCCCGAAATGGACCGGGTTCCCGTATTTCGAGGCCGCCGCGCACGGCGCGC
GCCGGGCCGCGAAGGAACTGGGCGATACGCTGGTCTACGCCGGGCCGGATCGGGCCGATGCGTCCCTGCAGGTGGAGACG
CTGGAAAATTTCCTGACCCAGCGCCCCAATGGCGTCATCCTGTCGGCGGTGGACCTGAATGCGGTGGCGCCGGTCCTGAA
ACGCGCGCGCAAGCGTGGCGTGGTGGTGACGACCTTCGATTCCGACGCCGCCCTTCCGGCGCGCGACATGTTCGTCAACC
AGCTTTCCTACGAACAGGCCGCGCGCACGATGCTGGATGCGGCGCTGATCGATGCGCCGCAGGGCGGTGAGATCGCGTTC
ATTTCGGCGTCGCCCACCGCGCCCAACCATGTGGCGCATATGCGCATCATGACGCAACTGACGCAGACCGATCCGAAATA
CAAGGTCTTCACGGTCGTGGATCGGCAATATGCGCAGGACGACGACGCCAAGAGCTATGACGTCGCGATCAACCTGATGC
AGGCGCACCCCAACCTGAAGGTCATCATTTCGTCGTCGGCGGTCAGCGCGCCCGCGGCGGCCCGGGCGATCGACGCCAGC
GGCCACGCCGGCAAGGTTTTCGCGACAGGCTTCGCCCTGCCGTCCGCCATAAAGAACTATCTGCAGGACGGTTCGGAAAA
GGCCTTCGCGTTGTGGAATCCGGAAGAGCTTGGGTACCTCGCGACCTATGTCACGCATCTCAGGCTTGCCGGTAAGCTGG
ACCTGAAACCGGGAACCAGCTTCGTCGCCGGCACGGCCGGCACCTACAAGGTGGGAGAGGACGGAGAAATAGATTACGGA
AAACCGCTGATATTCACGAAGGACAACATAGAAGCCGCCGGATTCTGA

Upstream 100 bases:

>100_bases
CCGGGGCGGCGCGGGGAAAGGCGCAGGCCGCCGGAACCTGACGACCCTGACGGAAGAGTCCCGAATAACAAACAATAAAC
AACAAGACGGGAGAACGATC

Downstream 100 bases:

>100_bases
TCGGAACCGGCCAACAAGCAGAAAAGGGAATACCCATGCGACCGACCTGTACCCTGACCGCCACGCTGAATGCGCGCCCC
GAGAAGCGCGCCGAACTGGT

Product: hypothetical protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MPAITRRAALIGAVLLSGMNPVSAVHAQDSGFRLMMTPKWTGFPYFEAAAHGARRAAKELGDTLVYAGPDRADASLQVET
LENFLTQRPNGVILSAVDLNAVAPVLKRARKRGVVVTTFDSDAALPARDMFVNQLSYEQAARTMLDAALIDAPQGGEIAF
ISASPTAPNHVAHMRIMTQLTQTDPKYKVFTVVDRQYAQDDDAKSYDVAINLMQAHPNLKVIISSSAVSAPAAARAIDAS
GHAGKVFATGFALPSAIKNYLQDGSEKAFALWNPEELGYLATYVTHLRLAGKLDLKPGTSFVAGTAGTYKVGEDGEIDYG
KPLIFTKDNIEAAGF

Sequences:

>Translated_335_residues
MPAITRRAALIGAVLLSGMNPVSAVHAQDSGFRLMMTPKWTGFPYFEAAAHGARRAAKELGDTLVYAGPDRADASLQVET
LENFLTQRPNGVILSAVDLNAVAPVLKRARKRGVVVTTFDSDAALPARDMFVNQLSYEQAARTMLDAALIDAPQGGEIAF
ISASPTAPNHVAHMRIMTQLTQTDPKYKVFTVVDRQYAQDDDAKSYDVAINLMQAHPNLKVIISSSAVSAPAAARAIDAS
GHAGKVFATGFALPSAIKNYLQDGSEKAFALWNPEELGYLATYVTHLRLAGKLDLKPGTSFVAGTAGTYKVGEDGEIDYG
KPLIFTKDNIEAAGF
>Mature_334_residues
PAITRRAALIGAVLLSGMNPVSAVHAQDSGFRLMMTPKWTGFPYFEAAAHGARRAAKELGDTLVYAGPDRADASLQVETL
ENFLTQRPNGVILSAVDLNAVAPVLKRARKRGVVVTTFDSDAALPARDMFVNQLSYEQAARTMLDAALIDAPQGGEIAFI
SASPTAPNHVAHMRIMTQLTQTDPKYKVFTVVDRQYAQDDDAKSYDVAINLMQAHPNLKVIISSSAVSAPAAARAIDASG
HAGKVFATGFALPSAIKNYLQDGSEKAFALWNPEELGYLATYVTHLRLAGKLDLKPGTSFVAGTAGTYKVGEDGEIDYGK
PLIFTKDNIEAAGF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=317, Percent_Identity=29.9684542586751, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1790526, Length=249, Percent_Identity=27.3092369477912, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35815; Mature: 35684

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAITRRAALIGAVLLSGMNPVSAVHAQDSGFRLMMTPKWTGFPYFEAAAHGARRAAKEL
CCCHHHHHHHHHHHHHCCCCCHHEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
GDTLVYAGPDRADASLQVETLENFLTQRPNGVILSAVDLNAVAPVLKRARKRGVVVTTFD
CCEEEEECCCCCCCEEEHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCEEEEEEC
SDAALPARDMFVNQLSYEQAARTMLDAALIDAPQGGEIAFISASPTAPNHVAHMRIMTQL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
TQTDPKYKVFTVVDRQYAQDDDAKSYDVAINLMQAHPNLKVIISSSAVSAPAAARAIDAS
HCCCCCEEEEEEECHHHCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCHHHHEECCC
GHAGKVFATGFALPSAIKNYLQDGSEKAFALWNPEELGYLATYVTHLRLAGKLDLKPGTS
CCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCEEECCCCCC
FVAGTAGTYKVGEDGEIDYGKPLIFTKDNIEAAGF
EEECCCCEEECCCCCCCCCCCCEEEECCCCCCCCC
>Mature Secondary Structure 
PAITRRAALIGAVLLSGMNPVSAVHAQDSGFRLMMTPKWTGFPYFEAAAHGARRAAKEL
CCHHHHHHHHHHHHHCCCCCHHEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
GDTLVYAGPDRADASLQVETLENFLTQRPNGVILSAVDLNAVAPVLKRARKRGVVVTTFD
CCEEEEECCCCCCCEEEHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCEEEEEEC
SDAALPARDMFVNQLSYEQAARTMLDAALIDAPQGGEIAFISASPTAPNHVAHMRIMTQL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
TQTDPKYKVFTVVDRQYAQDDDAKSYDVAINLMQAHPNLKVIISSSAVSAPAAARAIDAS
HCCCCCEEEEEEECHHHCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCHHHHEECCC
GHAGKVFATGFALPSAIKNYLQDGSEKAFALWNPEELGYLATYVTHLRLAGKLDLKPGTS
CCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCEEECCCCCC
FVAGTAGTYKVGEDGEIDYGKPLIFTKDNIEAAGF
EEECCCCEEECCCCCCCCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA