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The map label for this gene is rbsC [H]

Identifier: 162149491

GI number: 162149491

Start: 3813744

End: 3814748

Strand: Direct

Name: rbsC [H]

Synonym: GDI_3729

Alternate gene names: 162149491

Gene position: 3813744-3814748 (Clockwise)

Preceding gene: 162149490

Following gene: 162149492

Centisome position: 96.69

GC content: 69.45

Gene sequence:

>1005_bases
ATGAAACGCGCGGATCGCTGGTTGCGGTGGCGCCCCACCGCCTGGGAGGCGTGCCTGGTCGCGCTGATTTTGATGGCCGG
GGCGTGGTCGGCCTATCTCTCGCCCTATTACCTGGATATCGGCCAGATCCTGGATTCCGGTCGGCAGTTCATCATTCCGG
GTCTGCTGGCCTTCGGCCTGCTGCCGATCGTCCTGACGGGCGAGATCGACATCTCGCTGGCCTCGAACCTGGCCATCGGC
GCGGTGTTGCTGGGGCACCTGTCCGCCGCCGGGGTGTCGCCGTGGCTGGCGGTGCCGGTGGTGCTGGCGGTCTGCGCGCT
GCTGGGCGCGGTCAACGGCGTGCTGGTGTCCTGGATGGGGCTGCCGTCGCTGGCGATCACGCTGGGCACGATGGGCGCCT
ATCGCGGCCTGGCCTATGTCGTCGGCCTGGACACCGGATATACCGATTTCGACGACGCCTACCTGTCCGTGGGGTCCGGC
TACGTGTTCGGGATCGTCCCGGTTTCGCTGGTCCTGTTCCTGGGCGTGGCGGTGGTGATGGCCTTCGTGATCCATGGAAC
GGTCTTCGGACGCCGCATCTTCGCGGTGGGCCGGAACAGCGATGCCGCGCGGATCGTCGGTATCGACGTCACGCGGTTGA
AGATCGTCACCTACGCGATGGCCGGGGCCCTGGCCGGCCTGGCCGCGCTGGTCTGGATCGGCCAGTACGGATCGGCGCGC
GGGGACAATGCCGACGGCAGCGTGCTGTTCGTCGTCACCGCCGTCGTCCTGGGCGGCGTGGACATCAATGGCGGCAGGGG
GACGGTGCTGGGCGTGACGCTGGCGCTTCTGCTGCTGGGCACGCTGCGCAACGGGATGGGGCTTGCGAATGTGGGGGGGC
CGGTCCAGACGGTCGTCCTGGGCGCCCTGCTGCTGCTTGGCGTGCTGCGTCCCGTCGCCCTGCGGGCCTATCACGCGGTG
CGGTCCGGGGCGGCGCGGGGAAAGGCGCAGGCCGCCGGAACCTGA

Upstream 100 bases:

>100_bases
TGCAGGGGTGCGCCATCGTGCTGGCCATCGCGGCCGATGGCGCCGTGGCGCGCCAGGTCCGCCTGGCGCTGCGTGCCCAA
CGTATTGCGAGGATGCCCTG

Downstream 100 bases:

>100_bases
CGACCCTGACGGAAGAGTCCCGAATAACAAACAATAAACAACAAGACGGGAGAACGATCGTGCCAGCCATAACCCGACGT
GCGGCCCTGATCGGCGCGGT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MKRADRWLRWRPTAWEACLVALILMAGAWSAYLSPYYLDIGQILDSGRQFIIPGLLAFGLLPIVLTGEIDISLASNLAIG
AVLLGHLSAAGVSPWLAVPVVLAVCALLGAVNGVLVSWMGLPSLAITLGTMGAYRGLAYVVGLDTGYTDFDDAYLSVGSG
YVFGIVPVSLVLFLGVAVVMAFVIHGTVFGRRIFAVGRNSDAARIVGIDVTRLKIVTYAMAGALAGLAALVWIGQYGSAR
GDNADGSVLFVVTAVVLGGVDINGGRGTVLGVTLALLLLGTLRNGMGLANVGGPVQTVVLGALLLLGVLRPVALRAYHAV
RSGAARGKAQAAGT

Sequences:

>Translated_334_residues
MKRADRWLRWRPTAWEACLVALILMAGAWSAYLSPYYLDIGQILDSGRQFIIPGLLAFGLLPIVLTGEIDISLASNLAIG
AVLLGHLSAAGVSPWLAVPVVLAVCALLGAVNGVLVSWMGLPSLAITLGTMGAYRGLAYVVGLDTGYTDFDDAYLSVGSG
YVFGIVPVSLVLFLGVAVVMAFVIHGTVFGRRIFAVGRNSDAARIVGIDVTRLKIVTYAMAGALAGLAALVWIGQYGSAR
GDNADGSVLFVVTAVVLGGVDINGGRGTVLGVTLALLLLGTLRNGMGLANVGGPVQTVVLGALLLLGVLRPVALRAYHAV
RSGAARGKAQAAGT
>Mature_334_residues
MKRADRWLRWRPTAWEACLVALILMAGAWSAYLSPYYLDIGQILDSGRQFIIPGLLAFGLLPIVLTGEIDISLASNLAIG
AVLLGHLSAAGVSPWLAVPVVLAVCALLGAVNGVLVSWMGLPSLAITLGTMGAYRGLAYVVGLDTGYTDFDDAYLSVGSG
YVFGIVPVSLVLFLGVAVVMAFVIHGTVFGRRIFAVGRNSDAARIVGIDVTRLKIVTYAMAGALAGLAALVWIGQYGSAR
GDNADGSVLFVVTAVVLGGVDINGGRGTVLGVTLALLLLGTLRNGMGLANVGGPVQTVVLGALLLLGVLRPVALRAYHAV
RSGAARGKAQAAGT

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=308, Percent_Identity=34.7402597402597, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI145693152, Length=258, Percent_Identity=31.7829457364341, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1790191, Length=309, Percent_Identity=33.0097087378641, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1790524, Length=278, Percent_Identity=30.9352517985612, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788896, Length=290, Percent_Identity=30.6896551724138, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082395, Length=238, Percent_Identity=30.2521008403361, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787793, Length=236, Percent_Identity=33.0508474576271, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789992, Length=127, Percent_Identity=36.2204724409449, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788471, Length=210, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34383; Mature: 34383

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRADRWLRWRPTAWEACLVALILMAGAWSAYLSPYYLDIGQILDSGRQFIIPGLLAFGL
CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHH
LPIVLTGEIDISLASNLAIGAVLLGHLSAAGVSPWLAVPVVLAVCALLGAVNGVLVSWMG
HHHHEECCEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPSLAITLGTMGAYRGLAYVVGLDTGYTDFDDAYLSVGSGYVFGIVPVSLVLFLGVAVVM
CCHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
AFVIHGTVFGRRIFAVGRNSDAARIVGIDVTRLKIVTYAMAGALAGLAALVWIGQYGSAR
HHHHHHHHHHHEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GDNADGSVLFVVTAVVLGGVDINGGRGTVLGVTLALLLLGTLRNGMGLANVGGPVQTVVL
CCCCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
GALLLLGVLRPVALRAYHAVRSGAARGKAQAAGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKRADRWLRWRPTAWEACLVALILMAGAWSAYLSPYYLDIGQILDSGRQFIIPGLLAFGL
CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHH
LPIVLTGEIDISLASNLAIGAVLLGHLSAAGVSPWLAVPVVLAVCALLGAVNGVLVSWMG
HHHHEECCEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPSLAITLGTMGAYRGLAYVVGLDTGYTDFDDAYLSVGSGYVFGIVPVSLVLFLGVAVVM
CCHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
AFVIHGTVFGRRIFAVGRNSDAARIVGIDVTRLKIVTYAMAGALAGLAALVWIGQYGSAR
HHHHHHHHHHHEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GDNADGSVLFVVTAVVLGGVDINGGRGTVLGVTLALLLLGTLRNGMGLANVGGPVQTVVL
CCCCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
GALLLLGVLRPVALRAYHAVRSGAARGKAQAAGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]