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The map label for this gene is yciR [C]

Identifier: 162146695

GI number: 162146695

Start: 890235

End: 891287

Strand: Reverse

Name: yciR [C]

Synonym: GDI_0873

Alternate gene names: 162146695

Gene position: 891287-890235 (Counterclockwise)

Preceding gene: 162146696

Following gene: 162146690

Centisome position: 22.6

GC content: 52.04

Gene sequence:

>1053_bases
ATGGAACATGTCTTTTCGCAGACCGACTTTATAGTTCTCGAAGTCCTGGCACTCCTGGCATCTTTTCTGTCCTTTGGGGT
GGCATGCGCTCTGCGTCAGAACAATGGGGAAACAAGGCACCGGAAAATATTGAAGGCGTTGTTGCCAATTCCCTTTGGAA
CGACCCTCTGGACCATCCATTTCACGGCCATGCTTCGTACCGTCGGGTCGGAAAACATGTCCGTATCGATCGTGCATTGC
CTTGCTTCCTTCGCCATCGTGATGGCGGGCGTTTTCCTCTCCTTGAAAGTAATAGATCGCAGATTTCCGTATTCGAACTA
CATCGCCGGTTTCGTATTCGGCCTCGGGATCGTTTTAAGCCACATCATCAACAAGAACTCCATTCACTCACTTCATGGAT
GCCCGACAAGGAATGTTCACAACGCAACCGACATCCTTGGAGTTGTCTTGCTTGGATTGTCTTTTGTTTTGCTGTGGTCC
AGCATTCTGGGGTATTTTCTTGATTATTATGGAACCAAAAAGGTCCTGTCCCACCTGAAAAGCATGGCCACCACCGACAG
GTTGACTGGCCTGGCGAACCGGAACTGTCTCGACGAGCAGTTTCCCGACATCCTGAAGAACGCGAAACACCGGAACCGGA
CCATCGGATGCCTGATCGTCGATCTGAACAATTTCAAGGATATCAACGATCAGTACGGCCATCTCTGCGGTGATGAAGTC
CTCCGTACCATGGGAAAAAATCTGGGAAACCATTTCCGCCACCGCGACATCTTCATCGCCAGGCTGGGCGGCGACGAATT
CGTCGCGCTATGCCCCTATGACAATATGGAAGGTCTTCAGACCTGCGCCCAGGAACTGCGCGACCTGCTCTGCCAGCCGA
GCGAGATTGAAAGCATGCCCCTGACAGTCGGCTGCAGCATCGGCATCTCCCTTTTCCCTTCCGACGGCGACACCCAGAAC
ATCCTGATGAAAAAAGCCGATCAGGCCATGTACGAAATCAAGAAAAAACGCATCAGCGGAATATCGTTCTACAGGGACCT
TCCCCGCCCCTGA

Upstream 100 bases:

>100_bases
CGACCCCGACCTTCTTGGACAGCCACTGGTGGCATGGCTGCATGCTGGCTCCGTATCCTAAACAACGGAGCCCTCAAGTC
GAGCAAGAAATAACTGACGC

Downstream 100 bases:

>100_bases
CAGCGCGGCCTTGACCCGCACCCGCGTCCTAAGACGAACGCCGCCTCCGCCAGGGCAGCAAAAACGGCGCCCGGCCGTGG
TGGCCGAAATGCGCCAGCCG

Product: GGDEF family signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MEHVFSQTDFIVLEVLALLASFLSFGVACALRQNNGETRHRKILKALLPIPFGTTLWTIHFTAMLRTVGSENMSVSIVHC
LASFAIVMAGVFLSLKVIDRRFPYSNYIAGFVFGLGIVLSHIINKNSIHSLHGCPTRNVHNATDILGVVLLGLSFVLLWS
SILGYFLDYYGTKKVLSHLKSMATTDRLTGLANRNCLDEQFPDILKNAKHRNRTIGCLIVDLNNFKDINDQYGHLCGDEV
LRTMGKNLGNHFRHRDIFIARLGGDEFVALCPYDNMEGLQTCAQELRDLLCQPSEIESMPLTVGCSIGISLFPSDGDTQN
ILMKKADQAMYEIKKKRISGISFYRDLPRP

Sequences:

>Translated_350_residues
MEHVFSQTDFIVLEVLALLASFLSFGVACALRQNNGETRHRKILKALLPIPFGTTLWTIHFTAMLRTVGSENMSVSIVHC
LASFAIVMAGVFLSLKVIDRRFPYSNYIAGFVFGLGIVLSHIINKNSIHSLHGCPTRNVHNATDILGVVLLGLSFVLLWS
SILGYFLDYYGTKKVLSHLKSMATTDRLTGLANRNCLDEQFPDILKNAKHRNRTIGCLIVDLNNFKDINDQYGHLCGDEV
LRTMGKNLGNHFRHRDIFIARLGGDEFVALCPYDNMEGLQTCAQELRDLLCQPSEIESMPLTVGCSIGISLFPSDGDTQN
ILMKKADQAMYEIKKKRISGISFYRDLPRP
>Mature_350_residues
MEHVFSQTDFIVLEVLALLASFLSFGVACALRQNNGETRHRKILKALLPIPFGTTLWTIHFTAMLRTVGSENMSVSIVHC
LASFAIVMAGVFLSLKVIDRRFPYSNYIAGFVFGLGIVLSHIINKNSIHSLHGCPTRNVHNATDILGVVLLGLSFVLLWS
SILGYFLDYYGTKKVLSHLKSMATTDRLTGLANRNCLDEQFPDILKNAKHRNRTIGCLIVDLNNFKDINDQYGHLCGDEV
LRTMGKNLGNHFRHRDIFIARLGGDEFVALCPYDNMEGLQTCAQELRDLLCQPSEIESMPLTVGCSIGISLFPSDGDTQN
ILMKKADQAMYEIKKKRISGISFYRDLPRP

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=33.9285714285714, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=28.1914893617021, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788381, Length=179, Percent_Identity=31.2849162011173, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=30.625, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=33.9622641509434, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=35, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87081977, Length=160, Percent_Identity=31.25, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082007, Length=196, Percent_Identity=27.0408163265306, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788956, Length=171, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=31.5789473684211, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787802, Length=159, Percent_Identity=30.8176100628931, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87081921, Length=175, Percent_Identity=26.2857142857143, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 39159; Mature: 39159

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHVFSQTDFIVLEVLALLASFLSFGVACALRQNNGETRHRKILKALLPIPFGTTLWTIH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHH
FTAMLRTVGSENMSVSIVHCLASFAIVMAGVFLSLKVIDRRFPYSNYIAGFVFGLGIVLS
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
HIINKNSIHSLHGCPTRNVHNATDILGVVLLGLSFVLLWSSILGYFLDYYGTKKVLSHLK
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
SMATTDRLTGLANRNCLDEQFPDILKNAKHRNRTIGCLIVDLNNFKDINDQYGHLCGDEV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHH
LRTMGKNLGNHFRHRDIFIARLGGDEFVALCPYDNMEGLQTCAQELRDLLCQPSEIESMP
HHHHHHHHHHHHHHCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
LTVGCSIGISLFPSDGDTQNILMKKADQAMYEIKKKRISGISFYRDLPRP
EEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEHVFSQTDFIVLEVLALLASFLSFGVACALRQNNGETRHRKILKALLPIPFGTTLWTIH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHH
FTAMLRTVGSENMSVSIVHCLASFAIVMAGVFLSLKVIDRRFPYSNYIAGFVFGLGIVLS
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
HIINKNSIHSLHGCPTRNVHNATDILGVVLLGLSFVLLWSSILGYFLDYYGTKKVLSHLK
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
SMATTDRLTGLANRNCLDEQFPDILKNAKHRNRTIGCLIVDLNNFKDINDQYGHLCGDEV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHH
LRTMGKNLGNHFRHRDIFIARLGGDEFVALCPYDNMEGLQTCAQELRDLLCQPSEIESMP
HHHHHHHHHHHHHHCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
LTVGCSIGISLFPSDGDTQNILMKKADQAMYEIKKKRISGISFYRDLPRP
EEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]