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The map label for this gene is rni3 [H]

Identifier: 161870834

GI number: 161870834

Start: 1963960

End: 1964697

Strand: Direct

Name: rni3 [H]

Synonym: NMCC_1916

Alternate gene names: 161870834

Gene position: 1963960-1964697 (Clockwise)

Preceding gene: 161870833

Following gene: 161870835

Centisome position: 91.2

GC content: 58.81

Gene sequence:

>738_bases
ATGAAGCAGGTTGATTTAAACGCCGATCTCGCCGAAGGCTGCGGCAGCGACGAAGCCTTGTTGCAGCTGATTACTTCGGC
CAACATCGCCTGCGCCCAACACGCCGGCAGCATTGCCGATATTCGGGCGGCATTGGCGTATGCCCAACAAAACGGCGTGC
GCATCGGAGCACACCCCGGCTATCCCGATCGGGAAAACTTCGGCCGTACCGAAATGAATCTGTCCGAAGCCGATTTGCGG
GCGTGTCTGAATTACCAGTTGGGCGCATTGCAGGCCTTGTGCCGTGATCAGGGTTTGGAAATGGCTTATGTCAAACCGCA
CGGCGCAATGTACAACCAAGCGGCGAAAAACCGTGCGCTGGCGGATACCGTTGCCCGAATTGTGGCGGATTTCGACCCGA
AATTGAAATTGATGGCACTTTCCGGCAGCCTGCTCTTGGAAGCCGGAAAAGCCGCAGGCTTGGGTGTGATTTCCGAAGTA
TTCGCCGACCGCCGCTATATGCCCGACGGTACGCTGGTTCCCCGCAGCCGCCCCGATGCGCAGGTGGACAGCGACGAAGA
AGCCATCGCCCAAGTATTGCAGATGGTGCGGGACGGGCGGGTCAAAGCAGTGAACGGCAGCCTGGTTGCCGTGCAAGCCG
ACAGCATCTGTCTGCACGGAGACGGGCCGCACGCCGTGGTGTTTGCCGAAAAAATCCGGCAGGAACTACTGGCGGCAGGC
ATCAAAGTTTCTGCTTGA

Upstream 100 bases:

>100_bases
TTCGGCAGCAAAGTCAAATTCAAAATAATCGGCTTGAAAGAAGCCACCGCCCTGCGGCGCAAAAACCAAGTCTATCTGAA
CCAAATACGGAGAATCACCC

Downstream 100 bases:

>100_bases
AAAACAGTTCATAGGCCGTCTGAAAACCGCAGGTTTCGCCAAAACGAGCAAAGCGAGTTTCTGCGTAGCTAAAACCGCAG
GTTTCGCCCAAACACAGCAA

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKQVDLNADLAEGCGSDEALLQLITSANIACAQHAGSIADIRAALAYAQQNGVRIGAHPGYPDRENFGRTEMNLSEADLR
ACLNYQLGALQALCRDQGLEMAYVKPHGAMYNQAAKNRALADTVARIVADFDPKLKLMALSGSLLLEAGKAAGLGVISEV
FADRRYMPDGTLVPRSRPDAQVDSDEEAIAQVLQMVRDGRVKAVNGSLVAVQADSICLHGDGPHAVVFAEKIRQELLAAG
IKVSA

Sequences:

>Translated_245_residues
MKQVDLNADLAEGCGSDEALLQLITSANIACAQHAGSIADIRAALAYAQQNGVRIGAHPGYPDRENFGRTEMNLSEADLR
ACLNYQLGALQALCRDQGLEMAYVKPHGAMYNQAAKNRALADTVARIVADFDPKLKLMALSGSLLLEAGKAAGLGVISEV
FADRRYMPDGTLVPRSRPDAQVDSDEEAIAQVLQMVRDGRVKAVNGSLVAVQADSICLHGDGPHAVVFAEKIRQELLAAG
IKVSA
>Mature_245_residues
MKQVDLNADLAEGCGSDEALLQLITSANIACAQHAGSIADIRAALAYAQQNGVRIGAHPGYPDRENFGRTEMNLSEADLR
ACLNYQLGALQALCRDQGLEMAYVKPHGAMYNQAAKNRALADTVARIVADFDPKLKLMALSGSLLLEAGKAAGLGVISEV
FADRRYMPDGTLVPRSRPDAQVDSDEEAIAQVLQMVRDGRVKAVNGSLVAVQADSICLHGDGPHAVVFAEKIRQELLAAG
IKVSA

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family [H]

Homologues:

Organism=Escherichia coli, GI1786931, Length=243, Percent_Identity=52.2633744855967, Blast_Score=251, Evalue=2e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR005501 [H]

Pfam domain/function: PF03746 LamB_YcsF [H]

EC number: NA

Molecular weight: Translated: 26010; Mature: 26010

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVDLNADLAEGCGSDEALLQLITSANIACAQHAGSIADIRAALAYAQQNGVRIGAHPG
CCCCCCCCHHHHCCCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHCCEEECCCCC
YPDRENFGRTEMNLSEADLRACLNYQLGALQALCRDQGLEMAYVKPHGAMYNQAAKNRAL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH
ADTVARIVADFDPKLKLMALSGSLLLEAGKAAGLGVISEVFADRRYMPDGTLVPRSRPDA
HHHHHHHHHCCCCCEEEEEECCHHEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
QVDSDEEAIAQVLQMVRDGRVKAVNGSLVAVQADSICLHGDGPHAVVFAEKIRQELLAAG
CCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCEEEECCCCCEEHHHHHHHHHHHHCC
IKVSA
CCCCC
>Mature Secondary Structure
MKQVDLNADLAEGCGSDEALLQLITSANIACAQHAGSIADIRAALAYAQQNGVRIGAHPG
CCCCCCCCHHHHCCCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHCCEEECCCCC
YPDRENFGRTEMNLSEADLRACLNYQLGALQALCRDQGLEMAYVKPHGAMYNQAAKNRAL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH
ADTVARIVADFDPKLKLMALSGSLLLEAGKAAGLGVISEVFADRRYMPDGTLVPRSRPDA
HHHHHHHHHCCCCCEEEEEECCHHEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
QVDSDEEAIAQVLQMVRDGRVKAVNGSLVAVQADSICLHGDGPHAVVFAEKIRQELLAAG
CCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCEEEECCCCCEEHHHHHHHHHHHHCC
IKVSA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10722605; 10761919 [H]