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The map label for this gene is rlpA [C]

Identifier: 161870796

GI number: 161870796

Start: 1928687

End: 1929406

Strand: Direct

Name: rlpA [C]

Synonym: NMCC_1878

Alternate gene names: 161870796

Gene position: 1928687-1929406 (Clockwise)

Preceding gene: 161870795

Following gene: 161870797

Centisome position: 89.56

GC content: 56.53

Gene sequence:

>720_bases
TTGACTTTAACCCGAAAAACCCTTTTCCTTCTCACCGCCGCATTCGGCACACACTCCCTTCAGACGGCATCCGCCGACGC
AGTGGTCAAGGCAGAAAAACTGCACGCCTCCGCCAACCGCAGCTACAAAGTCGCCGGAAAACGCTACACGCCGAAAAACC
AAGTCGCCGAATTCACGCAAACCGGCAACGCCTCGTGGTACGGCGGCAGGTTTCACGGGCGCAAAACTTCCGGCGGAGAA
CGATACGATATGAACGCCTTTACCGCCGCCCACAAAACCCTGCCCATCCCCAGCTATGTGCGCGTAACCAATACCAAAAA
CGGCAAAAGCGTCATCGTCCGCGTCAACGACCGCGGCCCCTTCCACGGCAACCGCATCATCGACGTATCCAAAGCCGCCG
CGCAAAAATTGGGCTTTGTCAGCCAAGGGACGGCACACGTCAAAATCGAACAAATCGTCCCGGGCAAATCCGCACCGGTT
GCCGAAAACAAAGACATCTTTATCGACTTGAAATCTTTCGGTACGGAACACGAAGCACAAGCCTATCTGAACCAAGCCGC
CCAAAACTTCGCCGCTTCGACATCAAGCCCGAACCTCGCCATTGAAAAACGCCGTTACGAATACGTCGTCAAAATGGGTC
CGTTTGCCTCGCAGGAACGCGCCGCCGAGGCCGAAGCTCAGGCGCGCGGTATGGTTCAGACGGTATTGACCGCCGGTTGA

Upstream 100 bases:

>100_bases
CCGGACACATTCCGAACCGCCGTCCGCACTGTACGGCGGTTCGGAACGTATCCGGCGGGCATGATGCCCATTCGTCTTCA
ACTCAAGAACGGAACACGTT

Downstream 100 bases:

>100_bases
TGTCCCGCCTTTACGTCTTTCAAACACCACCAGATACTTCGCAGGAGCAAAACATGAACTTCAAACGCCTTCTCTTGACC
GCCGCCGCAACCGCACTGCT

Product: RlpA-like protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MTLTRKTLFLLTAAFGTHSLQTASADAVVKAEKLHASANRSYKVAGKRYTPKNQVAEFTQTGNASWYGGRFHGRKTSGGE
RYDMNAFTAAHKTLPIPSYVRVTNTKNGKSVIVRVNDRGPFHGNRIIDVSKAAAQKLGFVSQGTAHVKIEQIVPGKSAPV
AENKDIFIDLKSFGTEHEAQAYLNQAAQNFAASTSSPNLAIEKRRYEYVVKMGPFASQERAAEAEAQARGMVQTVLTAG

Sequences:

>Translated_239_residues
MTLTRKTLFLLTAAFGTHSLQTASADAVVKAEKLHASANRSYKVAGKRYTPKNQVAEFTQTGNASWYGGRFHGRKTSGGE
RYDMNAFTAAHKTLPIPSYVRVTNTKNGKSVIVRVNDRGPFHGNRIIDVSKAAAQKLGFVSQGTAHVKIEQIVPGKSAPV
AENKDIFIDLKSFGTEHEAQAYLNQAAQNFAASTSSPNLAIEKRRYEYVVKMGPFASQERAAEAEAQARGMVQTVLTAG
>Mature_238_residues
TLTRKTLFLLTAAFGTHSLQTASADAVVKAEKLHASANRSYKVAGKRYTPKNQVAEFTQTGNASWYGGRFHGRKTSGGER
YDMNAFTAAHKTLPIPSYVRVTNTKNGKSVIVRVNDRGPFHGNRIIDVSKAAAQKLGFVSQGTAHVKIEQIVPGKSAPVA
ENKDIFIDLKSFGTEHEAQAYLNQAAQNFAASTSSPNLAIEKRRYEYVVKMGPFASQERAAEAEAQARGMVQTVLTAG

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=122, Percent_Identity=41.8032786885246, Blast_Score=107, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 25950; Mature: 25818

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTRKTLFLLTAAFGTHSLQTASADAVVKAEKLHASANRSYKVAGKRYTPKNQVAEFTQ
CCCCHHHHEEEHHHHCCCCCCCCCCCHHEEHHHHHHCCCCCEEECCCCCCCHHHHHHHHH
TGNASWYGGRFHGRKTSGGERYDMNAFTAAHKTLPIPSYVRVTNTKNGKSVIVRVNDRGP
CCCCCEECCEECCCCCCCCCEECCHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCC
FHGNRIIDVSKAAAQKLGFVSQGTAHVKIEQIVPGKSAPVAENKDIFIDLKSFGTEHEAQ
CCCCEEEEHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEHHHCCCCHHHH
AYLNQAAQNFAASTSSPNLAIEKRRYEYVVKMGPFASQERAAEAEAQARGMVQTVLTAG
HHHHHHHHHHHCCCCCCCEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLTRKTLFLLTAAFGTHSLQTASADAVVKAEKLHASANRSYKVAGKRYTPKNQVAEFTQ
CCCHHHHEEEHHHHCCCCCCCCCCCHHEEHHHHHHCCCCCEEECCCCCCCHHHHHHHHH
TGNASWYGGRFHGRKTSGGERYDMNAFTAAHKTLPIPSYVRVTNTKNGKSVIVRVNDRGP
CCCCCEECCEECCCCCCCCCEECCHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCC
FHGNRIIDVSKAAAQKLGFVSQGTAHVKIEQIVPGKSAPVAENKDIFIDLKSFGTEHEAQ
CCCCEEEEHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEHHHCCCCHHHH
AYLNQAAQNFAASTSSPNLAIEKRRYEYVVKMGPFASQERAAEAEAQARGMVQTVLTAG
HHHHHHHHHHHCCCCCCCEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]