Click here to switch to the map view.

The map label for this gene is recO [H]

Identifier: 161870627

GI number: 161870627

Start: 1732444

End: 1733238

Strand: Reverse

Name: recO [H]

Synonym: NMCC_1696

Alternate gene names: 161870627

Gene position: 1733238-1732444 (Counterclockwise)

Preceding gene: 161870628

Following gene: 161870626

Centisome position: 80.49

GC content: 60.5

Gene sequence:

>795_bases
ATGATGTCCGAACACCGAGTCAACCACGAACCCGTCTTCCTGTTGGCTTCCTCGCCATGGCGCGAAAGCAGCCTGCGGGT
CGAAGCCTTCAGCCGCCGTTACGGGCGTGTGGCACTTTTGGCAAGAAGCGCGCGCAAGCGGCAGAGCGAATTGCGCGGCG
TATTGGTTCCTTTCGTGCCCGTCAGCGCGTCGTGGTACGGCAGTCAGGAACTCAAAACCCTGCACCGTGCCGAATGGGTC
GGCGGATGGCGGCAGCCGCAGGGCAGGGCGTTGTTCAGCGGTCTGTATGTGAACGAACTGGTGTTGAAACTGACCGCGCG
CGAAGATCCGATGCCCGAACTGTACGACGCGTTGGCAAAAGTGATGGAGGCGGTGTGCCGTGAAGCCAACCATATTGCCG
ATTTGCGCCGCTTCGAGTGGAAGCTGCTCAATGCCTTGGGCGTTGCCCCCGATTTGCACGCCGACAGCACGGGCGGCGAT
ATTTTGGCGGACAAAACCTACCGGCTGATGCCCGAAGAGGCGGTCATGCCCGTATGCGAGGACGCAGACGCGCTTTCGCA
CGAAGCCGGCGCAATTGTCGAAGGGCAAAGCCTGATCGATTTGCGCGAAGGCAGTTTCCGCACCGCCGAAAGCCTGCAAC
AGGCATTGAAAATCACACGGCTGCTGATCGGCACGCTGCTTCCCGAAGGCTTGAAATCGCGGCAGGTGTTGGAACAGATA
CGGCAGTTTGACCGCAAAGAAACCGCCCGGGAAACCGTCCCGACTTCGGACGGCACGGCTTCAAATGCCGTCTGA

Upstream 100 bases:

>100_bases
ATTGGAACGCTTGGGCGAACGCGCTTCGTTCGTCAAAGTCATCGGTTCGTACCCGACCGCCGTTTTGTAGCGGCGGCAGC
GTTCAGACGGCATTTCAGGC

Downstream 100 bases:

>100_bases
AGGCAGAAATAAAAGGAAAGATTATGCTTTTAGGTGTCAACATCGACCACATCGCTACCGTCCGCAATGCGCGCGGCACG
ACTTATCCCAGCCCCGTGGA

Product: DNA repair protein (recombination protein o)

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MMSEHRVNHEPVFLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELKTLHRAEWV
GGWRQPQGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREANHIADLRRFEWKLLNALGVAPDLHADSTGGD
ILADKTYRLMPEEAVMPVCEDADALSHEAGAIVEGQSLIDLREGSFRTAESLQQALKITRLLIGTLLPEGLKSRQVLEQI
RQFDRKETARETVPTSDGTASNAV

Sequences:

>Translated_264_residues
MMSEHRVNHEPVFLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELKTLHRAEWV
GGWRQPQGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREANHIADLRRFEWKLLNALGVAPDLHADSTGGD
ILADKTYRLMPEEAVMPVCEDADALSHEAGAIVEGQSLIDLREGSFRTAESLQQALKITRLLIGTLLPEGLKSRQVLEQI
RQFDRKETARETVPTSDGTASNAV
>Mature_264_residues
MMSEHRVNHEPVFLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPVSASWYGSQELKTLHRAEWV
GGWRQPQGRALFSGLYVNELVLKLTAREDPMPELYDALAKVMEAVCREANHIADLRRFEWKLLNALGVAPDLHADSTGGD
ILADKTYRLMPEEAVMPVCEDADALSHEAGAIVEGQSLIDLREGSFRTAESLQQALKITRLLIGTLLPEGLKSRQVLEQI
RQFDRKETARETVPTSDGTASNAV

Specific function: Involved in DNA repair and recF pathway recombination. Involved in pilin antigenic variation [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

Organism=Escherichia coli, GI2367140, Length=242, Percent_Identity=33.4710743801653, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 29546; Mature: 29546

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSEHRVNHEPVFLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVP
CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECEEE
VSASWYGSQELKTLHRAEWVGGWRQPQGRALFSGLYVNELVLKLTAREDPMPELYDALAK
CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
VMEAVCREANHIADLRRFEWKLLNALGVAPDLHADSTGGDILADKTYRLMPEEAVMPVCE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHCCCHHHCCCCCC
DADALSHEAGAIVEGQSLIDLREGSFRTAESLQQALKITRLLIGTLLPEGLKSRQVLEQI
CCHHHHHCCCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RQFDRKETARETVPTSDGTASNAV
HHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MMSEHRVNHEPVFLLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVP
CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECEEE
VSASWYGSQELKTLHRAEWVGGWRQPQGRALFSGLYVNELVLKLTAREDPMPELYDALAK
CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
VMEAVCREANHIADLRRFEWKLLNALGVAPDLHADSTGGDILADKTYRLMPEEAVMPVCE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHCCCHHHCCCCCC
DADALSHEAGAIVEGQSLIDLREGSFRTAESLQQALKITRLLIGTLLPEGLKSRQVLEQI
CCHHHHHCCCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RQFDRKETARETVPTSDGTASNAV
HHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10094619 [H]