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The map label for this gene is yocR [H]

Identifier: 161870551

GI number: 161870551

Start: 1646346

End: 1647764

Strand: Direct

Name: yocR [H]

Synonym: NMCC_1617

Alternate gene names: 161870551

Gene position: 1646346-1647764 (Clockwise)

Preceding gene: 161870550

Following gene: 161870555

Centisome position: 76.45

GC content: 50.88

Gene sequence:

>1419_bases
TTGCAGCGTCTTCCCCGGCTTGTGCCGCCGCGTCAAGTGCTTTGTTACAATGCACTACCTTCACATTTCTTAATAAATTT
TATGAGTAACCATACTTCTTGGTCGTCCAAAATCGGTTTCGTACTTGCTGCAGCAGGTTCGGCCATCGGTTTGGGCGCGA
TTTGGAAATTTCCTTATACGGCAGGCACCAACGGCGGCGCGGTGTTTTTCCTGCTGTTTTTGATATTTACTATCTTGGTC
GCCCTACCCGTTCAGCTTGCCGAATTTTATATCGGGCGCACGGGCGGTAAAAATGCCGTCGATTCCTTCAGGGTTCTGCG
TCCGGGCACGCAATGGCTTTGGGTCGGGCGTATGGGCGTTGCCGCCTGCTTTATTTTGCTGTCGTTTTACAGCGTGGTCG
GCGGATGGGTATTAAATTATGTCGTCCACAGTTTTACGGGGGCGGTTCATACCGGCGCGGACTTTGAAGCCTTGTTCGGC
GCGACGATTTCCAATCCGGCAGGTTCGCTGTCCTATCAGGCTCTGTTTATGCTGATTACGGTTTGGGTGGTCAAAGGTGG
GATTTCAGACGGCATTGAAAAGGCAAACCGTTATCTGATGCCGGGGCTGTTTATCCTCTTTATTGCGCTGGCAATCCGTT
CGCTGACGCTGCCGGGTGCAATGGAGGGCGTGTCATTCCTGCTCAAACCGAATTGGTCGTACTTTAAAGCCGATACGATG
ATTACGGCTTTGGGACAGGCGTTTTTTGCCCTGAGCATCGGTGTTTCCGCCATGATTACCTACGCTTCATATTTGGGAAA
AGATCAGGATATGTTCCGCTCGGGGCATACGATTATGTGGATGAACCTCTTGGTTTCGCTGCTTGCCGGCCTGGTGATTT
TTCCGGCGGTGTTCGCCTTCGGTTTTGAACCGAGCCAGGGGCCGGGATTGATTTTTATCGTATTGCCCGCAGTGTTTATG
AAGATGCCGTTCGGTACGGTTTTGTTTGCGGTATTTATGCTGCTGGTCGTTTTCGCCACGCTGACTTCCGCATTTTCGAT
GTTGGAAACGGTCATCGCCGCAACCATCCGCCAAGACGAGCGCAAACGCAAAAAACACACTTGGCTTATCGGCACGGCCA
TTTTCATTATCGGCATCCCATCCGCGCTGTCTTTCGGCGTATGGGGTGAGTTTAAGGTTTTCGGCAAAACCATTTTTGAT
TTGTGGGACTATGTTATTTCCGCCGTCATTATGCCGATTGGTGCTTTGAGTGTTTCCATCTTTACCGCCTGGATTCAGGA
CAAGCAGTCTGTGTTAAAAGATGCCGGCGCGGGCAGCACCGTACCACGGGCAGTGCTGCTGCTGTGGCTGAATACCTTGC
GCTACCTTGCCCCGATTGCCATTATTATTGTTTTCATCAATTCTTTGGACATCCTTTAA

Upstream 100 bases:

>100_bases
CAAATTATATTCGTTCATTGGAAAGAAACACCCCGAATTCATCCTTCAAAATAAGAAAATCCCAATATCCCCCGATATTA
CGCAGCCTATTGGCAAAGTT

Downstream 100 bases:

>100_bases
AAGCCATCCAAACAGCAAAAATGCCGTCTGAAAGCCTTTCAGACGGCATTTTTGCTTCAGGTTCAGCCTATTTCGTTCAA
AGTATAGTGGATTAACAAAA

Product: sodium- and chloride-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MQRLPRLVPPRQVLCYNALPSHFLINFMSNHTSWSSKIGFVLAAAGSAIGLGAIWKFPYTAGTNGGAVFFLLFLIFTILV
ALPVQLAEFYIGRTGGKNAVDSFRVLRPGTQWLWVGRMGVAACFILLSFYSVVGGWVLNYVVHSFTGAVHTGADFEALFG
ATISNPAGSLSYQALFMLITVWVVKGGISDGIEKANRYLMPGLFILFIALAIRSLTLPGAMEGVSFLLKPNWSYFKADTM
ITALGQAFFALSIGVSAMITYASYLGKDQDMFRSGHTIMWMNLLVSLLAGLVIFPAVFAFGFEPSQGPGLIFIVLPAVFM
KMPFGTVLFAVFMLLVVFATLTSAFSMLETVIAATIRQDERKRKKHTWLIGTAIFIIGIPSALSFGVWGEFKVFGKTIFD
LWDYVISAVIMPIGALSVSIFTAWIQDKQSVLKDAGAGSTVPRAVLLLWLNTLRYLAPIAIIIVFINSLDIL

Sequences:

>Translated_472_residues
MQRLPRLVPPRQVLCYNALPSHFLINFMSNHTSWSSKIGFVLAAAGSAIGLGAIWKFPYTAGTNGGAVFFLLFLIFTILV
ALPVQLAEFYIGRTGGKNAVDSFRVLRPGTQWLWVGRMGVAACFILLSFYSVVGGWVLNYVVHSFTGAVHTGADFEALFG
ATISNPAGSLSYQALFMLITVWVVKGGISDGIEKANRYLMPGLFILFIALAIRSLTLPGAMEGVSFLLKPNWSYFKADTM
ITALGQAFFALSIGVSAMITYASYLGKDQDMFRSGHTIMWMNLLVSLLAGLVIFPAVFAFGFEPSQGPGLIFIVLPAVFM
KMPFGTVLFAVFMLLVVFATLTSAFSMLETVIAATIRQDERKRKKHTWLIGTAIFIIGIPSALSFGVWGEFKVFGKTIFD
LWDYVISAVIMPIGALSVSIFTAWIQDKQSVLKDAGAGSTVPRAVLLLWLNTLRYLAPIAIIIVFINSLDIL
>Mature_472_residues
MQRLPRLVPPRQVLCYNALPSHFLINFMSNHTSWSSKIGFVLAAAGSAIGLGAIWKFPYTAGTNGGAVFFLLFLIFTILV
ALPVQLAEFYIGRTGGKNAVDSFRVLRPGTQWLWVGRMGVAACFILLSFYSVVGGWVLNYVVHSFTGAVHTGADFEALFG
ATISNPAGSLSYQALFMLITVWVVKGGISDGIEKANRYLMPGLFILFIALAIRSLTLPGAMEGVSFLLKPNWSYFKADTM
ITALGQAFFALSIGVSAMITYASYLGKDQDMFRSGHTIMWMNLLVSLLAGLVIFPAVFAFGFEPSQGPGLIFIVLPAVFM
KMPFGTVLFAVFMLLVVFATLTSAFSMLETVIAATIRQDERKRKKHTWLIGTAIFIIGIPSALSFGVWGEFKVFGKTIFD
LWDYVISAVIMPIGALSVSIFTAWIQDKQSVLKDAGAGSTVPRAVLLLWLNTLRYLAPIAIIIVFINSLDIL

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=450, Percent_Identity=25.7777777777778, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI4507043, Length=412, Percent_Identity=25.9708737864078, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI171184408, Length=441, Percent_Identity=25.6235827664399, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI171184406, Length=441, Percent_Identity=25.6235827664399, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI171184404, Length=441, Percent_Identity=25.6235827664399, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI188528618, Length=423, Percent_Identity=24.113475177305, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI7657587, Length=375, Percent_Identity=24.5333333333333, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI4507041, Length=463, Percent_Identity=23.7580993520518, Blast_Score=108, Evalue=9e-24,
Organism=Homo sapiens, GI134304856, Length=420, Percent_Identity=23.8095238095238, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI58219014, Length=311, Percent_Identity=26.0450160771704, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI194018524, Length=304, Percent_Identity=26.9736842105263, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI33354281, Length=308, Percent_Identity=25.974025974026, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI51468073, Length=307, Percent_Identity=26.0586319218241, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI289191351, Length=411, Percent_Identity=23.8442822384428, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI4557046, Length=411, Percent_Identity=23.8442822384428, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI289191377, Length=413, Percent_Identity=23.9709443099274, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI11181770, Length=290, Percent_Identity=25.8620689655172, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI6005715, Length=562, Percent_Identity=22.2419928825623, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI5032097, Length=380, Percent_Identity=23.9473684210526, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI218563756, Length=380, Percent_Identity=23.6842105263158, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI300360519, Length=281, Percent_Identity=25.2669039145907, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI92859670, Length=238, Percent_Identity=25.2100840336134, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI12408638, Length=275, Percent_Identity=25.8181818181818, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI21361693, Length=120, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI55749589, Length=333, Percent_Identity=22.8228228228228, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI67782317, Length=200, Percent_Identity=28, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI67782313, Length=200, Percent_Identity=27.5, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI67782315, Length=200, Percent_Identity=27.5, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI197276623, Length=116, Percent_Identity=33.6206896551724, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI54607094, Length=116, Percent_Identity=33.6206896551724, Blast_Score=67, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17554804, Length=466, Percent_Identity=25.7510729613734, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI25146584, Length=415, Percent_Identity=24.8192771084337, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI133952791, Length=238, Percent_Identity=27.7310924369748, Blast_Score=88, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI71998244, Length=343, Percent_Identity=24.198250728863, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17555248, Length=172, Percent_Identity=26.7441860465116, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI212642127, Length=196, Percent_Identity=23.9795918367347, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI17136952, Length=441, Percent_Identity=26.530612244898, Blast_Score=138, Evalue=9e-33,
Organism=Drosophila melanogaster, GI281364394, Length=441, Percent_Identity=26.530612244898, Blast_Score=135, Evalue=7e-32,
Organism=Drosophila melanogaster, GI28574704, Length=441, Percent_Identity=26.530612244898, Blast_Score=135, Evalue=7e-32,
Organism=Drosophila melanogaster, GI17136950, Length=441, Percent_Identity=26.530612244898, Blast_Score=135, Evalue=7e-32,
Organism=Drosophila melanogaster, GI28574702, Length=441, Percent_Identity=26.530612244898, Blast_Score=135, Evalue=7e-32,
Organism=Drosophila melanogaster, GI45551088, Length=477, Percent_Identity=26.4150943396226, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24652942, Length=477, Percent_Identity=26.4150943396226, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI19921936, Length=400, Percent_Identity=26.5, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24762620, Length=412, Percent_Identity=26.6990291262136, Blast_Score=118, Evalue=1e-26,
Organism=Drosophila melanogaster, GI281363702, Length=449, Percent_Identity=24.4988864142539, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24582567, Length=473, Percent_Identity=26.215644820296, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24661428, Length=472, Percent_Identity=24.1525423728814, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI281364136, Length=481, Percent_Identity=25.3638253638254, Blast_Score=105, Evalue=9e-23,
Organism=Drosophila melanogaster, GI24639514, Length=508, Percent_Identity=23.2283464566929, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI221329674, Length=508, Percent_Identity=23.2283464566929, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI281365034, Length=368, Percent_Identity=24.4565217391304, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24639516, Length=302, Percent_Identity=25.4966887417219, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24639853, Length=510, Percent_Identity=24.3137254901961, Blast_Score=96, Evalue=7e-20,
Organism=Drosophila melanogaster, GI281363700, Length=336, Percent_Identity=25.297619047619, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19921352, Length=374, Percent_Identity=23.5294117647059, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24584353, Length=374, Percent_Identity=23.5294117647059, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24655079, Length=298, Percent_Identity=26.1744966442953, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24654186, Length=278, Percent_Identity=25.8992805755396, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI45551183, Length=174, Percent_Identity=29.3103448275862, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI45550877, Length=174, Percent_Identity=29.3103448275862, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24582569, Length=432, Percent_Identity=24.3055555555556, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 51567; Mature: 51567

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]