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The map label for this gene is ymdC [H]

Identifier: 161870302

GI number: 161870302

Start: 1357041

End: 1358639

Strand: Reverse

Name: ymdC [H]

Synonym: NMCC_1344

Alternate gene names: 161870302

Gene position: 1358639-1357041 (Counterclockwise)

Preceding gene: 161870303

Following gene: 161870301

Centisome position: 63.09

GC content: 58.1

Gene sequence:

>1599_bases
TTGGATTATGATGCCGCACTTCCATGCGCACCAACCCCAAAACACAGGCAATGCCGTCTGAACCGATTTCCTATGAAAAC
ACGCAGCCTCCTTCCCCTGTTGTTCCTCCTGCTCTGCTCGTGCGCCGCATGGCTGCCGCCCTTGGACGAACGCACGGAAA
GCCGCCATTTTGACACTGCTTCCCCCGTCCGTTTGGATAAAGTCCTGCACATCCGCCATTTCCCGTCCGACAGCCGCCTG
TCCGACATTTACCTGCTCGACGACCCCCACGAAGCCTTTGCCGCCCGCGCCGCCCTTATCGAATCTGCCGAACACAGCCT
CGATTTGCAATACTACATCTGGCGCAACGACATTTCCGGCCGACTGCTGTTCAACCTCGTGTACCTTGCCGCAGAACGCG
GTGTGCGCGTACGCCTGCTGTTGGACGACAACAACACGCGCGGATTGGACGACCTCCTGCTCGCCCTCGACAGCCATCCC
AATATCGAAGTGCGCCTGTTCAACCCCTTCGTCTTACGAAAATGGCGCGCACTCGGCTACCTGACCGACTTCCCCCGCCT
CAACCGCCGCATGCACAACAAATCCTTTACCGCCGACAACCGCGCCACCATACTCGGCGGACGCAATATCGGCGACGAAT
ACTTCAAAGTCGGTGAGGACACCGTTTTCGCCGACCTGGACATCCTCGCCACCGGCAGCGTCGTCGGCGAAGTATCGCAC
GACTTCGACCGCTACTGGGCAAGCCATTCCGCCCACAACGCCACGCGCATCATCCGCAGCGGCAACATCGGCAAGGGTCT
TCAAGCACTCGGATACAACGACGAAACGTCCAGACACGCGCTCCTGCGCTACCGCGAAACCGTCGAACAGTCGCCCCTCT
ACCAAAAAATACAGACAGGACGCATCGACTGGCAGAGCGTCCAAACCCGCCTCATCAGCGACGACCCTGCAAAAGGACTC
GACCGCGACCGCCGCAAACCGCCGATTGCCGGGCGGCTGCAAGACGCGCTCAAACAGCCCGAAAAAAGCGTCTATCTGGT
TTCACCCTATTTCGTCCCCACAAAATCCGGCACAGACGCACTGGCAAAACTGGTGCAGGACGGCATAGACGTTACCGTCC
TGACCAACTCGCTACAGGCGACCGACGTTGCCGCCGTCCATTCCGGCTATGTCAAATACCGAAAACCGCTGCTCAAAGCC
GGCATCAAACTCTACGAGCTGCAACCCAACCATGCCGTCCCTGCCACAAAAGACAAAGGCCTGACCGGCAGCTCCGTAAC
CAGCCTGCATGCCAAAACCTTCATTGTGGACGGCAAACGCATCTTCATCGGCTCATTCAACCTCGACCCCCGTTCCGCAC
GGCTCAATACTGAAATGGGCGTTGTTATCGAAAGCCCCAAAATCGCAGAACAGATGGAGCGCACCCTTGCCGATACCACA
CCCAAATACGCCTACCGCGTTACCCTCGACAGGCACAACCGCCTGCAATGGCACGATCCCGCCACCCGAAAAACCTACCC
GAACGAACCCGAAGCCAAACTTTGGAAACGCATCGCCGCAAAAATCCTATCCCTGCTGCCCATAGAAGGTTTATTATAG

Upstream 100 bases:

>100_bases
CTGGTATTCAATCGGCTGCACGTTTCAGACGGCACCAACCTGACACGGAATACACCGTCCTGAAGCGGTCCGCACGCAAA
ACTTTTACCCGTTTCAACGT

Downstream 100 bases:

>100_bases
AAATGTAGCGGATTAACAAAAACCAGTACGACGTTGCCTCGCCTTAGCTCAAAGAGAACGATTCTCTAAGGTGCTGAAGC
ACCAAGTGAATCGGTTCCGT

Product: phopholipase D-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MDYDAALPCAPTPKHRQCRLNRFPMKTRSLLPLLFLLLCSCAAWLPPLDERTESRHFDTASPVRLDKVLHIRHFPSDSRL
SDIYLLDDPHEAFAARAALIESAEHSLDLQYYIWRNDISGRLLFNLVYLAAERGVRVRLLLDDNNTRGLDDLLLALDSHP
NIEVRLFNPFVLRKWRALGYLTDFPRLNRRMHNKSFTADNRATILGGRNIGDEYFKVGEDTVFADLDILATGSVVGEVSH
DFDRYWASHSAHNATRIIRSGNIGKGLQALGYNDETSRHALLRYRETVEQSPLYQKIQTGRIDWQSVQTRLISDDPAKGL
DRDRRKPPIAGRLQDALKQPEKSVYLVSPYFVPTKSGTDALAKLVQDGIDVTVLTNSLQATDVAAVHSGYVKYRKPLLKA
GIKLYELQPNHAVPATKDKGLTGSSVTSLHAKTFIVDGKRIFIGSFNLDPRSARLNTEMGVVIESPKIAEQMERTLADTT
PKYAYRVTLDRHNRLQWHDPATRKTYPNEPEAKLWKRIAAKILSLLPIEGLL

Sequences:

>Translated_532_residues
MDYDAALPCAPTPKHRQCRLNRFPMKTRSLLPLLFLLLCSCAAWLPPLDERTESRHFDTASPVRLDKVLHIRHFPSDSRL
SDIYLLDDPHEAFAARAALIESAEHSLDLQYYIWRNDISGRLLFNLVYLAAERGVRVRLLLDDNNTRGLDDLLLALDSHP
NIEVRLFNPFVLRKWRALGYLTDFPRLNRRMHNKSFTADNRATILGGRNIGDEYFKVGEDTVFADLDILATGSVVGEVSH
DFDRYWASHSAHNATRIIRSGNIGKGLQALGYNDETSRHALLRYRETVEQSPLYQKIQTGRIDWQSVQTRLISDDPAKGL
DRDRRKPPIAGRLQDALKQPEKSVYLVSPYFVPTKSGTDALAKLVQDGIDVTVLTNSLQATDVAAVHSGYVKYRKPLLKA
GIKLYELQPNHAVPATKDKGLTGSSVTSLHAKTFIVDGKRIFIGSFNLDPRSARLNTEMGVVIESPKIAEQMERTLADTT
PKYAYRVTLDRHNRLQWHDPATRKTYPNEPEAKLWKRIAAKILSLLPIEGLL
>Mature_532_residues
MDYDAALPCAPTPKHRQCRLNRFPMKTRSLLPLLFLLLCSCAAWLPPLDERTESRHFDTASPVRLDKVLHIRHFPSDSRL
SDIYLLDDPHEAFAARAALIESAEHSLDLQYYIWRNDISGRLLFNLVYLAAERGVRVRLLLDDNNTRGLDDLLLALDSHP
NIEVRLFNPFVLRKWRALGYLTDFPRLNRRMHNKSFTADNRATILGGRNIGDEYFKVGEDTVFADLDILATGSVVGEVSH
DFDRYWASHSAHNATRIIRSGNIGKGLQALGYNDETSRHALLRYRETVEQSPLYQKIQTGRIDWQSVQTRLISDDPAKGL
DRDRRKPPIAGRLQDALKQPEKSVYLVSPYFVPTKSGTDALAKLVQDGIDVTVLTNSLQATDVAAVHSGYVKYRKPLLKA
GIKLYELQPNHAVPATKDKGLTGSSVTSLHAKTFIVDGKRIFIGSFNLDPRSARLNTEMGVVIESPKIAEQMERTLADTT
PKYAYRVTLDRHNRLQWHDPATRKTYPNEPEAKLWKRIAAKILSLLPIEGLL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=457, Percent_Identity=48.5776805251641, Blast_Score=421, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60260; Mature: 60260

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYDAALPCAPTPKHRQCRLNRFPMKTRSLLPLLFLLLCSCAAWLPPLDERTESRHFDTA
CCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCC
SPVRLDKVLHIRHFPSDSRLSDIYLLDDPHEAFAARAALIESAEHSLDLQYYIWRNDISG
CCHHHHHEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCH
RLLFNLVYLAAERGVRVRLLLDDNNTRGLDDLLLALDSHPNIEVRLFNPFVLRKWRALGY
HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHH
LTDFPRLNRRMHNKSFTADNRATILGGRNIGDEYFKVGEDTVFADLDILATGSVVGEVSH
HHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHCCCCEEEEEEEEEECCCHHHHHHH
DFDRYWASHSAHNATRIIRSGNIGKGLQALGYNDETSRHALLRYRETVEQSPLYQKIQTG
HHHHHHHCCCCCCHHHEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHCC
RIDWQSVQTRLISDDPAKGLDRDRRKPPIAGRLQDALKQPEKSVYLVSPYFVPTKSGTDA
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECEEEECCCCHHH
LAKLVQDGIDVTVLTNSLQATDVAAVHSGYVKYRKPLLKAGIKLYELQPNHAVPATKDKG
HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
LTGSSVTSLHAKTFIVDGKRIFIGSFNLDPRSARLNTEMGVVIESPKIAEQMERTLADTT
CCCCCHHHEEEEEEEEECCEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCC
PKYAYRVTLDRHNRLQWHDPATRKTYPNEPEAKLWKRIAAKILSLLPIEGLL
CCEEEEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDYDAALPCAPTPKHRQCRLNRFPMKTRSLLPLLFLLLCSCAAWLPPLDERTESRHFDTA
CCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCC
SPVRLDKVLHIRHFPSDSRLSDIYLLDDPHEAFAARAALIESAEHSLDLQYYIWRNDISG
CCHHHHHEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCH
RLLFNLVYLAAERGVRVRLLLDDNNTRGLDDLLLALDSHPNIEVRLFNPFVLRKWRALGY
HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHH
LTDFPRLNRRMHNKSFTADNRATILGGRNIGDEYFKVGEDTVFADLDILATGSVVGEVSH
HHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHCCCCEEEEEEEEEECCCHHHHHHH
DFDRYWASHSAHNATRIIRSGNIGKGLQALGYNDETSRHALLRYRETVEQSPLYQKIQTG
HHHHHHHCCCCCCHHHEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHCC
RIDWQSVQTRLISDDPAKGLDRDRRKPPIAGRLQDALKQPEKSVYLVSPYFVPTKSGTDA
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECEEEECCCCHHH
LAKLVQDGIDVTVLTNSLQATDVAAVHSGYVKYRKPLLKAGIKLYELQPNHAVPATKDKG
HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
LTGSSVTSLHAKTFIVDGKRIFIGSFNLDPRSARLNTEMGVVIESPKIAEQMERTLADTT
CCCCCHHHEEEEEEEEECCEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCC
PKYAYRVTLDRHNRLQWHDPATRKTYPNEPEAKLWKRIAAKILSLLPIEGLL
CCEEEEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]