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The map label for this gene is ydhO [H]

Identifier: 161870301

GI number: 161870301

Start: 1356300

End: 1356935

Strand: Reverse

Name: ydhO [H]

Synonym: NMCC_1343

Alternate gene names: 161870301

Gene position: 1356935-1356300 (Counterclockwise)

Preceding gene: 161870302

Following gene: 161870299

Centisome position: 63.01

GC content: 56.13

Gene sequence:

>636_bases
TTGTACTGTCTGCGGCTTCGTCGCCTTGTCCTGATTTTTGTTAATCCACTATACCGTCTGAAACACCTTCAGACGGATAT
CCGAACCCGCAAAGGAAAAACCATGTTTCCCCCCGACAAAACCCTTTTCCTCTGTCTCAGCGCACTGCTCCTCGCCTCAT
GCGGCACGACCTCCGGCAAACACCGCCAACCGAAACCCAAACAGACAGTCCGGCAAATCCAAGCCGTCCGCATCAGCCAC
ATCGACCGCACACAAGGCTCGCAGGAACTCATGCTCCACAGCCTCGGACTCATCGGCACGCCCTACAAATGGGGCGGCAG
CAGCACCGCAACCGGCTTCGATTGCAGCGGCATGATTCAATTCGTTTACAAAAACGCCCTCAACGTCAAGCTGCCGCGCA
CCGCCCGCGACATGGCGGCGGCAAGCCGCAAAATCCCCGACAGCCGCCTTAAGGCCGGCGACCTCGTATTCTTCAACACC
GGCGGCACACACCGCTACTCACACGTCGGACTCTATATCGGCAACGGCGAATTCATCCATGCCCCCAGCAGCGGCAAAAC
CATCAAAACCGAAAAACTCTCCACACCGTTTTACGCCAAAAACTACCTCGGCGCACATACTTTCTTTACAGAATGA

Upstream 100 bases:

>100_bases
TAGCGGATTAACAAAAACCAGTACGACGTTGCCTCGCCTTAGCTCAAAGAGAACGATTCTCTAAGGTGCTGAAGCACCAA
GTGAATCGGTTCCGTACTAT

Downstream 100 bases:

>100_bases
GCCGCCCGCCGCGCCGCGCCGGAATCGCGGCAAAATGCCGCCTTATTCCGTTGTTTCGGTCAGTGAAGAGAACACGTCGA
AATAAGTCGGGAAGGTTTTA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MYCLRLRRLVLIFVNPLYRLKHLQTDIRTRKGKTMFPPDKTLFLCLSALLLASCGTTSGKHRQPKPKQTVRQIQAVRISH
IDRTQGSQELMLHSLGLIGTPYKWGGSSTATGFDCSGMIQFVYKNALNVKLPRTARDMAAASRKIPDSRLKAGDLVFFNT
GGTHRYSHVGLYIGNGEFIHAPSSGKTIKTEKLSTPFYAKNYLGAHTFFTE

Sequences:

>Translated_211_residues
MYCLRLRRLVLIFVNPLYRLKHLQTDIRTRKGKTMFPPDKTLFLCLSALLLASCGTTSGKHRQPKPKQTVRQIQAVRISH
IDRTQGSQELMLHSLGLIGTPYKWGGSSTATGFDCSGMIQFVYKNALNVKLPRTARDMAAASRKIPDSRLKAGDLVFFNT
GGTHRYSHVGLYIGNGEFIHAPSSGKTIKTEKLSTPFYAKNYLGAHTFFTE
>Mature_211_residues
MYCLRLRRLVLIFVNPLYRLKHLQTDIRTRKGKTMFPPDKTLFLCLSALLLASCGTTSGKHRQPKPKQTVRQIQAVRISH
IDRTQGSQELMLHSLGLIGTPYKWGGSSTATGFDCSGMIQFVYKNALNVKLPRTARDMAAASRKIPDSRLKAGDLVFFNT
GGTHRYSHVGLYIGNGEFIHAPSSGKTIKTEKLSTPFYAKNYLGAHTFFTE

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=135, Percent_Identity=41.4814814814815, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1786421, Length=133, Percent_Identity=38.3458646616541, Blast_Score=110, Evalue=5e-26,
Organism=Escherichia coli, GI1788501, Length=170, Percent_Identity=28.8235294117647, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788001, Length=107, Percent_Identity=38.3177570093458, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 23623; Mature: 23623

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYCLRLRRLVLIFVNPLYRLKHLQTDIRTRKGKTMFPPDKTLFLCLSALLLASCGTTSGK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
HRQPKPKQTVRQIQAVRISHIDRTQGSQELMLHSLGLIGTPYKWGGSSTATGFDCSGMIQ
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
FVYKNALNVKLPRTARDMAAASRKIPDSRLKAGDLVFFNTGGTHRYSHVGLYIGNGEFIH
HHHHCCCCEECCCHHHHHHHHHHCCCHHHCCCCCEEEEECCCCCEEEEEEEEECCCCEEE
APSSGKTIKTEKLSTPFYAKNYLGAHTFFTE
CCCCCCEEEECCCCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MYCLRLRRLVLIFVNPLYRLKHLQTDIRTRKGKTMFPPDKTLFLCLSALLLASCGTTSGK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
HRQPKPKQTVRQIQAVRISHIDRTQGSQELMLHSLGLIGTPYKWGGSSTATGFDCSGMIQ
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
FVYKNALNVKLPRTARDMAAASRKIPDSRLKAGDLVFFNTGGTHRYSHVGLYIGNGEFIH
HHHHCCCCEECCCHHHHHHHHHHCCCHHHCCCCCEEEEECCCCCEEEEEEEEECCCCEEE
APSSGKTIKTEKLSTPFYAKNYLGAHTFFTE
CCCCCCEEEECCCCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]