Click here to switch to the map view.

The map label for this gene is ychE [H]

Identifier: 161870224

GI number: 161870224

Start: 1264627

End: 1265280

Strand: Reverse

Name: ychE [H]

Synonym: NMCC_1265

Alternate gene names: 161870224

Gene position: 1265280-1264627 (Counterclockwise)

Preceding gene: 161870230

Following gene: 161870223

Centisome position: 58.76

GC content: 56.88

Gene sequence:

>654_bases
ATGGGATTGGGTATGGAAATCGGCAAGCTGATTGTGGCTTTTTTGGTGCTGATTAATCCGTTTAGCGCGTTGTCGCTTTA
CCTTGACCTGACCAACGGGCACAGCACGAAGGAGCGCAGGAAGGTCGCGCGGACGGCCGCCGTTGCCGTGTTTGCCGTGA
TTGCGGTATTTGCGCTGATCGGCGGTACGCTGCTGAAGGTTTTGGGCATCAGCGTCGGTTCGTTTCAGGTCGGCGGCGGA
ATTTTGGTGCTGCTGATCGCCATTTCGATGATGAACGGCAACGACAATCCCGCCAAGCAGAATCTCGGCGCGCAGCCGGA
CACGGGGCAGGCGCGCCCCGCTCGCAATGCCGGAGCGATTGCCGTCGTGCCCATCGCCATACCGATTACCATCGGCCCGG
GCGGTATTTCGACCGTGATTATTTATGCTTCGGCGGCTAAAACATACGGCGACATCACACTGATTATCGCGGCCGGTTTG
GTGGTCAGTGCGATTTGTTATGCCATTTTAATCGTTGCCGGGAAGGTCAGCCGCCTGCTGGGTGCGACGGGGCTGACGAT
TTTAAACCGCATTATGGGTATGATGCTGGCGGCGGTATCGGTGGAGATTATTGTGTCGGGACTGAAAACGATATTCCCGC
AACTGGCAGGTTGA

Upstream 100 bases:

>100_bases
GGCGTATTGCTTGAATTTTTAATTATAACGGAAAAATCCGTTGCGGCGGCAATTTGCAGCATCGGATGCCTGCCGCACGG
GTTTGAAGGAGGGGGAAATA

Downstream 100 bases:

>100_bases
TTCGATGTTTCACAGTGTCAATGTATTTACGGGCGAAACGCTTTACCGCCGCCCCGCCCAAGATTATGCGGAGTTTGAAC
GGCGGCTGGCGGATTTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MGLGMEIGKLIVAFLVLINPFSALSLYLDLTNGHSTKERRKVARTAAVAVFAVIAVFALIGGTLLKVLGISVGSFQVGGG
ILVLLIAISMMNGNDNPAKQNLGAQPDTGQARPARNAGAIAVVPIAIPITIGPGGISTVIIYASAAKTYGDITLIIAAGL
VVSAICYAILIVAGKVSRLLGATGLTILNRIMGMMLAAVSVEIIVSGLKTIFPQLAG

Sequences:

>Translated_217_residues
MGLGMEIGKLIVAFLVLINPFSALSLYLDLTNGHSTKERRKVARTAAVAVFAVIAVFALIGGTLLKVLGISVGSFQVGGG
ILVLLIAISMMNGNDNPAKQNLGAQPDTGQARPARNAGAIAVVPIAIPITIGPGGISTVIIYASAAKTYGDITLIIAAGL
VVSAICYAILIVAGKVSRLLGATGLTILNRIMGMMLAAVSVEIIVSGLKTIFPQLAG
>Mature_216_residues
GLGMEIGKLIVAFLVLINPFSALSLYLDLTNGHSTKERRKVARTAAVAVFAVIAVFALIGGTLLKVLGISVGSFQVGGGI
LVLLIAISMMNGNDNPAKQNLGAQPDTGQARPARNAGAIAVVPIAIPITIGPGGISTVIIYASAAKTYGDITLIIAAGLV
VSAICYAILIVAGKVSRLLGATGLTILNRIMGMMLAAVSVEIIVSGLKTIFPQLAG

Specific function: Unknown

COG id: COG2095

COG function: function code U; Multiple antibiotic transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0056 (marC) family [H]

Homologues:

Organism=Escherichia coli, GI1787494, Length=207, Percent_Identity=31.8840579710145, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI1787809, Length=203, Percent_Identity=30.0492610837438, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1789842, Length=204, Percent_Identity=24.0196078431373, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002771 [H]

Pfam domain/function: PF01914 MarC [H]

EC number: NA

Molecular weight: Translated: 22076; Mature: 21945

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLGMEIGKLIVAFLVLINPFSALSLYLDLTNGHSTKERRKVARTAAVAVFAVIAVFALI
CCCCHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GGTLLKVLGISVGSFQVGGGILVLLIAISMMNGNDNPAKQNLGAQPDTGQARPARNAGAI
HHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCE
AVVPIAIPITIGPGGISTVIIYASAAKTYGDITLIIAAGLVVSAICYAILIVAGKVSRLL
EEEEEEEEEEECCCCCEEEEEEEHHHCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GATGLTILNRIMGMMLAAVSVEIIVSGLKTIFPQLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GLGMEIGKLIVAFLVLINPFSALSLYLDLTNGHSTKERRKVARTAAVAVFAVIAVFALI
CCCHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GGTLLKVLGISVGSFQVGGGILVLLIAISMMNGNDNPAKQNLGAQPDTGQARPARNAGAI
HHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCE
AVVPIAIPITIGPGGISTVIIYASAAKTYGDITLIIAAGLVVSAICYAILIVAGKVSRLL
EEEEEEEEEEECCCCCEEEEEEEHHHCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GATGLTILNRIMGMMLAAVSVEIIVSGLKTIFPQLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2015910; 9097039; 9278503 [H]