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The map label for this gene is ctpA [H]

Identifier: 161870205

GI number: 161870205

Start: 1239268

End: 1240752

Strand: Reverse

Name: ctpA [H]

Synonym: NMCC_1245

Alternate gene names: 161870205

Gene position: 1240752-1239268 (Counterclockwise)

Preceding gene: 161870206

Following gene: 161870204

Centisome position: 57.62

GC content: 52.66

Gene sequence:

>1485_bases
ATGTCGAAACCTGTTTTTAAGAAAATCGCACTTTATACTTTGGGTGCAATCAGCGGCGTGGCCGTCAGTCTGGCGGTGCA
GGGTTTTGCCGCCGAGAAGGACAGGCGGGATAACGAAGTCCTGCCGGTGCAATCCATCCGCACAATGGCGGAGGTTTACG
GTCAAATCAAGGCAAACTACTATCAGGACAAACCCGATGCCGATTTGTTTGAAGGTGCGATGAAGGGTATGGTGGCCGGT
TTGGATCCGCATTCCGAATATATGGATAAAAAAGGTTATGCCGAGATAAAGGAGTCCACCAGCGGCGAATTTGGCGGCTT
GGGGATGGAAATCGGGCAGGAAGACGGATTTGTCAAAGTGGTTTCGCCGATTGAGGACACGCCTGCGGAACGGGCGGGGG
TGAAAAGCGGCGATTTCATTGTGAAAATCGATAATGTTTCGACACGCGGCATGACGGTCAGCGAAGCGGTGAAGAAAATG
CGGGGCAAGCCGGGTACGAAGATTACTTTGACGCTGTCGCGCAAAAATGCCGACAAGCCGATAGTCGTCAACCTGACCCG
TGCCATTATTAAAGTGAAAAGCGTCCGCCATCACCTGATCGAACCCGATTACGGCTATATCCGCGTGTCGCAGTTCCAAG
AGCGGACGGTCGAAAGCGTCAATACCGCCGCAAAAGAGCTGGTAAAGGAAAATAAAGGAAAACCGCTCAAGGGGCTGGTG
TTGGATTTGCGCGACGACCCCGGCGGGCTTTTGACTGGCGCGGTCGGCGTGTCGGCGGCATTTCTGCCGTCTGAAGCAGT
CGTCGTCAGCACCAAGGGACGCGACGGCAAAGACCGCATGGTACTGAAAGCCATTCCTGAAGATTATGTGTACGGGATGG
GCGGCGATTCGTTGGCGGGCATTCCTGCCGAGTTGAAAACCATACCGATGACGGTATTGGTCAATTCCGGTTCGGCTTCC
GCGTCGGAGATTGTCGCAGGTGCATTGCAGGATCATAAACGCGCGGTCATCGTCGGTACGCAGAGCTTCGGCAAAGGTTC
GGTTCAGACTTTGATTCCTTTGTCCAACGGCAGCGCGGTCAAGCTGACAACGGCACTGTATTATACGCCGAACGACCGTT
CTATTCAGGCGCAGGGGATTGTTCCCGATGTCGAAGTAAAAGATAAGGAACGCATTTTTGAAAGCCGCGAGGCGGATTTG
GTCGGACACATCGGCAATCCTTTGGGCGGCGAGGATGTGAACAGTGAAACCCTTGCCGTGCCGCTTGAAAAAGATGCGGA
TAAGCCCGCTGTAAAAGAAAAAGGTAAAAAGAAAAAGGACGAGGATTTGTCTTCAAGGCGGATTCCCAACCCTGCCAAAG
ACGACCAGTTGCGGAAAGCTTTGGATTTGGTCAAGTCGCCCGAGCAGTGGCAGAAGTCTTTGGGGCTGGCGGCGAAAAAG
CCGGTTTCAAATAAAGATAAGAAAGATAAAAAAGATAAGAAGTAG

Upstream 100 bases:

>100_bases
TGCAAATCGTGCCGATATGGTGCGCTGTTCCGTGAAGTTTGCCGTTTGCCGTACCTGTATTTTCCGGTTTTTGGAAATCA
AGAGAGAAAGTTAAAGAAGA

Downstream 100 bases:

>100_bases
GTTTTTACGATGCCGTCTGAAAGGATTTCAGACGGCATATTATGTTTGAAAGGACAGGTTATGAGCGATTTTTTACCGGA
ATTTGAACCGTGCGGCATTT

Product: carboxy-terminal processing protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 494; Mature: 493

Protein sequence:

>494_residues
MSKPVFKKIALYTLGAISGVAVSLAVQGFAAEKDRRDNEVLPVQSIRTMAEVYGQIKANYYQDKPDADLFEGAMKGMVAG
LDPHSEYMDKKGYAEIKESTSGEFGGLGMEIGQEDGFVKVVSPIEDTPAERAGVKSGDFIVKIDNVSTRGMTVSEAVKKM
RGKPGTKITLTLSRKNADKPIVVNLTRAIIKVKSVRHHLIEPDYGYIRVSQFQERTVESVNTAAKELVKENKGKPLKGLV
LDLRDDPGGLLTGAVGVSAAFLPSEAVVVSTKGRDGKDRMVLKAIPEDYVYGMGGDSLAGIPAELKTIPMTVLVNSGSAS
ASEIVAGALQDHKRAVIVGTQSFGKGSVQTLIPLSNGSAVKLTTALYYTPNDRSIQAQGIVPDVEVKDKERIFESREADL
VGHIGNPLGGEDVNSETLAVPLEKDADKPAVKEKGKKKKDEDLSSRRIPNPAKDDQLRKALDLVKSPEQWQKSLGLAAKK
PVSNKDKKDKKDKK

Sequences:

>Translated_494_residues
MSKPVFKKIALYTLGAISGVAVSLAVQGFAAEKDRRDNEVLPVQSIRTMAEVYGQIKANYYQDKPDADLFEGAMKGMVAG
LDPHSEYMDKKGYAEIKESTSGEFGGLGMEIGQEDGFVKVVSPIEDTPAERAGVKSGDFIVKIDNVSTRGMTVSEAVKKM
RGKPGTKITLTLSRKNADKPIVVNLTRAIIKVKSVRHHLIEPDYGYIRVSQFQERTVESVNTAAKELVKENKGKPLKGLV
LDLRDDPGGLLTGAVGVSAAFLPSEAVVVSTKGRDGKDRMVLKAIPEDYVYGMGGDSLAGIPAELKTIPMTVLVNSGSAS
ASEIVAGALQDHKRAVIVGTQSFGKGSVQTLIPLSNGSAVKLTTALYYTPNDRSIQAQGIVPDVEVKDKERIFESREADL
VGHIGNPLGGEDVNSETLAVPLEKDADKPAVKEKGKKKKDEDLSSRRIPNPAKDDQLRKALDLVKSPEQWQKSLGLAAKK
PVSNKDKKDKKDKK
>Mature_493_residues
SKPVFKKIALYTLGAISGVAVSLAVQGFAAEKDRRDNEVLPVQSIRTMAEVYGQIKANYYQDKPDADLFEGAMKGMVAGL
DPHSEYMDKKGYAEIKESTSGEFGGLGMEIGQEDGFVKVVSPIEDTPAERAGVKSGDFIVKIDNVSTRGMTVSEAVKKMR
GKPGTKITLTLSRKNADKPIVVNLTRAIIKVKSVRHHLIEPDYGYIRVSQFQERTVESVNTAAKELVKENKGKPLKGLVL
DLRDDPGGLLTGAVGVSAAFLPSEAVVVSTKGRDGKDRMVLKAIPEDYVYGMGGDSLAGIPAELKTIPMTVLVNSGSASA
SEIVAGALQDHKRAVIVGTQSFGKGSVQTLIPLSNGSAVKLTTALYYTPNDRSIQAQGIVPDVEVKDKERIFESREADLV
GHIGNPLGGEDVNSETLAVPLEKDADKPAVKEKGKKKKDEDLSSRRIPNPAKDDQLRKALDLVKSPEQWQKSLGLAAKKP
VSNKDKKDKKDKK

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=342, Percent_Identity=27.7777777777778, Blast_Score=105, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 53269; Mature: 53137

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPVFKKIALYTLGAISGVAVSLAVQGFAAEKDRRDNEVLPVQSIRTMAEVYGQIKANY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
YQDKPDADLFEGAMKGMVAGLDPHSEYMDKKGYAEIKESTSGEFGGLGMEIGQEDGFVKV
CCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCEECCCCCEEEE
VSPIEDTPAERAGVKSGDFIVKIDNVSTRGMTVSEAVKKMRGKPGTKITLTLSRKNADKP
ECCCCCCCHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCC
IVVNLTRAIIKVKSVRHHLIEPDYGYIRVSQFQERTVESVNTAAKELVKENKGKPLKGLV
EEEEHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
LDLRDDPGGLLTGAVGVSAAFLPSEAVVVSTKGRDGKDRMVLKAIPEDYVYGMGGDSLAG
EEECCCCCCEEEHHHHHHEEECCCCEEEEEECCCCCCCCEEEEECCHHHEECCCCCCCCC
IPAELKTIPMTVLVNSGSASASEIVAGALQDHKRAVIVGTQSFGKGSVQTLIPLSNGSAV
CCHHHEECEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEECCCCEE
KLTTALYYTPNDRSIQAQGIVPDVEVKDKERIFESREADLVGHIGNPLGGEDVNSETLAV
EEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCEEEE
PLEKDADKPAVKEKGKKKKDEDLSSRRIPNPAKDDQLRKALDLVKSPEQWQKSLGLAAKK
ECCCCCCCCHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCC
PVSNKDKKDKKDKK
CCCCCCCCCCCCCC
>Mature Secondary Structure 
SKPVFKKIALYTLGAISGVAVSLAVQGFAAEKDRRDNEVLPVQSIRTMAEVYGQIKANY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
YQDKPDADLFEGAMKGMVAGLDPHSEYMDKKGYAEIKESTSGEFGGLGMEIGQEDGFVKV
CCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCEECCCCCEEEE
VSPIEDTPAERAGVKSGDFIVKIDNVSTRGMTVSEAVKKMRGKPGTKITLTLSRKNADKP
ECCCCCCCHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCC
IVVNLTRAIIKVKSVRHHLIEPDYGYIRVSQFQERTVESVNTAAKELVKENKGKPLKGLV
EEEEHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
LDLRDDPGGLLTGAVGVSAAFLPSEAVVVSTKGRDGKDRMVLKAIPEDYVYGMGGDSLAG
EEECCCCCCEEEHHHHHHEEECCCCEEEEEECCCCCCCCEEEEECCHHHEECCCCCCCCC
IPAELKTIPMTVLVNSGSASASEIVAGALQDHKRAVIVGTQSFGKGSVQTLIPLSNGSAV
CCHHHEECEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEECCCCEE
KLTTALYYTPNDRSIQAQGIVPDVEVKDKERIFESREADLVGHIGNPLGGEDVNSETLAV
EEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCEEEE
PLEKDADKPAVKEKGKKKKDEDLSSRRIPNPAKDDQLRKALDLVKSPEQWQKSLGLAAKK
ECCCCCCCCHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCC
PVSNKDKKDKKDKK
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]