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The map label for this gene is rarA [H]

Identifier: 161870104

GI number: 161870104

Start: 1131389

End: 1132699

Strand: Reverse

Name: rarA [H]

Synonym: NMCC_1143

Alternate gene names: 161870104

Gene position: 1132699-1131389 (Counterclockwise)

Preceding gene: 161870107

Following gene: 161870103

Centisome position: 52.6

GC content: 58.35

Gene sequence:

>1311_bases
ATGACCGATTTGTTTGCCCGAGAACCCGACGCGCCGCTTGCCGAACGATTGCGTCCGCATACGCTTGACGACGTGGTGGG
GCAGGAACACCTCATCGGCGAAGGTAAACCTTTGCGCGTGGCGGTAGAAGGCGGCAAGCCGCATTCTATGTTGCTGTGGG
GGCCGCCGGGCGTGGGCAAGACGACGTTGGCGCGGATTTTGGCGCAGAGTTTCAATGCCCAGTTTTTGCCTGTTTCCGCC
GTGTTTTCCGGCGTGAAGGACATCCGCGAGGCAATCGATAAAGCCGAAATCGCTTTGCAGCAGGGACGCGCGACGATTTT
GTTTGTCGATGAAGTCCACCGCTTCAACAAGGCGCAGCAGGACGCGTTTTTGCCGCATGTCGAAAGCGGTTTGCTAACCT
TTATTGGTGCGACGACGGAAAATCCGTCGTTTGAAGTCAATCCCGCGCTGTTGAGCCGCGCGCAGGTGTATGTTTTGCAG
CCCTTGTCTTCAGACGGCCTCAAAAAGCTGGTTGCCAAAGTTTTGGCTTTGCCCGAATACCGGGATTTCACGATTGAAGC
CGACGCGCAGGAGCTGTTCGTCAATACCGCCGACGGTGATGCGCGCAGATTGTTGAATTTGTTGGAACAACTTTTACGCG
CCGCCGATACACGTCGTCTGAAAAACTTAACCGCCGAATTTCTCGCCGACAGTCTCGGGGCGCAAATCCGCCGTTTCGAC
AAAGGCGGCGAGAGCTTCTACAACCAAATCTCCGCCCTGCACAAATCCGTGCGCGGTTCGCATCCGAACGCCGCGCTGTA
TTGGTTCTGCCGTATGCTCGACGGCGGCACCGACCCGCGCTACCTCGCCCGCCGCATCGTGCGTATCGCTTGGGAAGACA
TCGGGCTTGCCGACCCGCGCGCCTTCCAAATCGCCAACGATGCCGCCGCCACCTTCGAACGCTTAGGCTCGCCCGAAGGC
GAACTGGCTTTGGCGCAAGCCGTGCTGTACCTTGCCGCCGCTGCCAAATCCAACGCGGGCTACAAGGCATACAACCAAAT
GCGCCACTTCGTCAAAGAAAACGCCAGCGACGAAGTGCCCGTCCACCTGCGCAACGCCCCGACCAAGCTGATGAAGGAAT
TGGGCTACGGACGCGAATACCGCTACGCCCACGACGAACCGAACGCCTACTCCGCCGGCGAAAGCTATATGCCCGACGGC
TTGGACGAACCGGACTTCTACCAACCCGTCCCGCGCGGGTTGGAAATCAAAATCGGCGAAAAGCTGGCGTGGCTCAAATC
GCTGGATGAAGAGGCATTAAAGGCAAAATGA

Upstream 100 bases:

>100_bases
TATCGGCTTAAGGCAAACGGAGGGGCGGAATCCGTATGCGGCACGCCGCCGTTCCCTGCCGTATAATCATATTGTTTGAA
AACCTGTTGACGGAGCCGTT

Downstream 100 bases:

>100_bases
AGCAATGCCGTCTGAAGCAGAACAGTATGGCAAAGCCGGTACACCGAAAAGGCGTATCGGGTTTTTCAGGTGTTATAATC
CGTTTCAATAAATTTTGATG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MTDLFAREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHSMLLWGPPGVGKTTLARILAQSFNAQFLPVSA
VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQ
PLSSDGLKKLVAKVLALPEYRDFTIEADAQELFVNTADGDARRLLNLLEQLLRAADTRRLKNLTAEFLADSLGAQIRRFD
KGGESFYNQISALHKSVRGSHPNAALYWFCRMLDGGTDPRYLARRIVRIAWEDIGLADPRAFQIANDAAATFERLGSPEG
ELALAQAVLYLAAAAKSNAGYKAYNQMRHFVKENASDEVPVHLRNAPTKLMKELGYGREYRYAHDEPNAYSAGESYMPDG
LDEPDFYQPVPRGLEIKIGEKLAWLKSLDEEALKAK

Sequences:

>Translated_436_residues
MTDLFAREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHSMLLWGPPGVGKTTLARILAQSFNAQFLPVSA
VFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQ
PLSSDGLKKLVAKVLALPEYRDFTIEADAQELFVNTADGDARRLLNLLEQLLRAADTRRLKNLTAEFLADSLGAQIRRFD
KGGESFYNQISALHKSVRGSHPNAALYWFCRMLDGGTDPRYLARRIVRIAWEDIGLADPRAFQIANDAAATFERLGSPEG
ELALAQAVLYLAAAAKSNAGYKAYNQMRHFVKENASDEVPVHLRNAPTKLMKELGYGREYRYAHDEPNAYSAGESYMPDG
LDEPDFYQPVPRGLEIKIGEKLAWLKSLDEEALKAK
>Mature_435_residues
TDLFAREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHSMLLWGPPGVGKTTLARILAQSFNAQFLPVSAV
FSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQP
LSSDGLKKLVAKVLALPEYRDFTIEADAQELFVNTADGDARRLLNLLEQLLRAADTRRLKNLTAEFLADSLGAQIRRFDK
GGESFYNQISALHKSVRGSHPNAALYWFCRMLDGGTDPRYLARRIVRIAWEDIGLADPRAFQIANDAAATFERLGSPEGE
LALAQAVLYLAAAAKSNAGYKAYNQMRHFVKENASDEVPVHLRNAPTKLMKELGYGREYRYAHDEPNAYSAGESYMPDGL
DEPDFYQPVPRGLEIKIGEKLAWLKSLDEEALKAK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=41.8181818181818, Blast_Score=306, Evalue=2e-83,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=37.5, Blast_Score=249, Evalue=2e-66,
Organism=Escherichia coli, GI1787119, Length=427, Percent_Identity=53.864168618267, Blast_Score=449, Evalue=1e-127,
Organism=Escherichia coli, GI1786676, Length=234, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324111, Length=410, Percent_Identity=41.4634146341463, Blast_Score=295, Evalue=7e-81,
Organism=Saccharomyces cerevisiae, GI6324039, Length=231, Percent_Identity=27.2727272727273, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI18859927, Length=222, Percent_Identity=27.4774774774775, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI19921076, Length=216, Percent_Identity=27.3148148148148, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17647857, Length=207, Percent_Identity=28.9855072463768, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48321; Mature: 48190

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLFAREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHSMLLWGPPGVGK
CCCCCCCCCCCCHHHHCCCCCHHHHCCCHHHCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQ
HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH
DAFLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDGLKKLVAKVLALPEY
HHCCCHHHCCCEEEEECCCCCCCEEECHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCC
RDFTIEADAQELFVNTADGDARRLLNLLEQLLRAADTRRLKNLTAEFLADSLGAQIRRFD
CCEEEECCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KGGESFYNQISALHKSVRGSHPNAALYWFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
AFQIANDAAATFERLGSPEGELALAQAVLYLAAAAKSNAGYKAYNQMRHFVKENASDEVP
CEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC
VHLRNAPTKLMKELGYGREYRYAHDEPNAYSAGESYMPDGLDEPDFYQPVPRGLEIKIGE
EEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECH
KLAWLKSLDEEALKAK
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDLFAREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHSMLLWGPPGVGK
CCCCCCCCCCCHHHHCCCCCHHHHCCCHHHCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQ
HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH
DAFLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDGLKKLVAKVLALPEY
HHCCCHHHCCCEEEEECCCCCCCEEECHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCC
RDFTIEADAQELFVNTADGDARRLLNLLEQLLRAADTRRLKNLTAEFLADSLGAQIRRFD
CCEEEECCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KGGESFYNQISALHKSVRGSHPNAALYWFCRMLDGGTDPRYLARRIVRIAWEDIGLADPR
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
AFQIANDAAATFERLGSPEGELALAQAVLYLAAAAKSNAGYKAYNQMRHFVKENASDEVP
CEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC
VHLRNAPTKLMKELGYGREYRYAHDEPNAYSAGESYMPDGLDEPDFYQPVPRGLEIKIGE
EEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECH
KLAWLKSLDEEALKAK
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]