Click here to switch to the map view.

The map label for this gene is ybiT [H]

Identifier: 161870082

GI number: 161870082

Start: 1107753

End: 1109555

Strand: Direct

Name: ybiT [H]

Synonym: NMCC_1120

Alternate gene names: 161870082

Gene position: 1107753-1109555 (Clockwise)

Preceding gene: 161870079

Following gene: 161870084

Centisome position: 51.44

GC content: 50.42

Gene sequence:

>1803_bases
TTGGGATGCCGTGAAGGACTATCATTTGGAAACCTTTTGTCTGAAATAATAAAACGGATATTTTACTATAAGTGTCTGAA
AATTTGCCCGTCTGTTTCAGACGGCGGGGCGGTTATGTTACAATCCGAAAATTCGAAAAATTTAATCTCTTGTTCAATAA
AGGCTTTACCAATCATGATTTCTACCAACGGCATTACCATGCAGTTCGGCGCAAAGCCGCTGTTTGAAAACGTATCCGTC
AAATTCGGCGAAGGCAACCGTTACGGCTTGATCGGCGCGAACGGTTCGGGCAAATCCACCTTCATGAAAATCCTCGGCGG
CGATTTGGAACAGACGGCCGGCGAAGTGGCGATTGAAAACGGCGTGCGTTTGGGTAAATTGCGCCAAGACCAGTTTGCCT
ACGAAGAGATGCGCGTGCTGGACGTGGTGATGATGGGGCATACCGAAATGTGGGCGGCGATGACCGAGCGTGATGCGATT
TACGCCAATCCCGAAGCCACCGAAGACGACTATATGAAAGCCGCCGAACTGGAAGCCAAGTTCGCCGAATACGACGGTTA
CACCGCCGAAGCGCACGCTGCCGAACTGTTGAGCGGCGTGGGCATTTCCGAAGATTTGCACAATGCGACCATGGCAGAAG
TTGCCCCGGGCTTCAAACTGCGTGTATTGCTGGCGCAAGCCCTGTTCTCCAAGCCGGATGTGCTGCTGCTTGACGAACCG
ACCAACAACTTGGACATCAACACTATCCGCTGGTTGGAAGGCGTGTTGAACCAATATGATTCTACGATGATTATTATTTC
GCACGACCGCCACTTTTTGAACGAAGTCTGCACCCATATGGCGGATTTGGACTACAACACTATCACCATCTATCCGGGCA
ACTACGACGATTACATGCTCGCTTCTGCCCAATCGCGTGAGCGCGCCCTGAAAGACAATGCCAAGGCGAAAGAAAAATTG
CAGGAATTGCAAGAATTTGTGGCGCGGTTCAGTGCCAACAAATCCAAAGCCCGTCAGGCGACCAGCCGTCTGAAACAGGC
AGACAAAATCAAATCGGAGATGGTCGAAGTCAAACCTTCCACCCGCCAAAACCCGTATATCCGTTTTGAAGCCGACGAAA
AAGCCAAGTTGCACCGTCAGGCTGTGGAAGTGGAAAAACTGGCGAAACGCTTTGAAACCCAGTTGTTTAAAAACCTGAAC
TTCATCCTCGAAGCGGGACAACGCCTTGCCATCATCGGCCCGAACGGCGCAGGTAAATCTACCTTGCTGAAACTCTTGGC
AGGCGCGTACAACCCCGAATATTCAGACGGCCTGTTACCGGACGAAGGCACCATCAAATGGGCGGAAAAAGCCAGCGTCG
GCTACTATCCGCAAGATCACGAAAACGACTTCGATGTCGATATGGATTTGAGCGAATGGATGCGCCAATGGGGTCAGGAA
GGCGATGACGAACAAGTCATCCGTGGTACTTTGGGGCGTTTGCTCTTCGGCAGCAACGACGTAGTAAAAAAAGTGAAAGT
CCTCTCCGGCGGTGAAAAAGGCCGTATGCTTTACGGCAAACTGCTGCTGTTGAAACCCAATGTTTTGGTGATGGACGAAC
CGACCAACCACATGGACATGGAAAGCATCGAATCCTTGAACATGGCGCTGGAAAAATACAACGGCACGCTGATTTTCGTC
TCCCACGACCGTCAGTTCGTTTCTTCCCTTGCAACCCAAATCATCGAACTGGACGGCAAAGGCGGATATGAACACTACTT
GGGCGATTACGAAAGTTACTTGGAGAAAAAAGGCATAGCATAA

Upstream 100 bases:

>100_bases
ATTTCCGCTTCAGACGGCCTCTGTTTTTTGAAATCCCGAAATTCAAACTCCAAGCCGTATCCGGCAAGCCTGTTTTTGGC
TTTTTTGACCGTATCGCAAT

Downstream 100 bases:

>100_bases
GCGCACAAAATACCCGTCAGTTGAAACAATGCCGTCTGAAGCCGCTTCAGACGGCATTATTGATAACTTTAAAATAGGAA
GCATATGCAGACTTACCTCG

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 600; Mature: 599

Protein sequence:

>600_residues
MGCREGLSFGNLLSEIIKRIFYYKCLKICPSVSDGGAVMLQSENSKNLISCSIKALPIMISTNGITMQFGAKPLFENVSV
KFGEGNRYGLIGANGSGKSTFMKILGGDLEQTAGEVAIENGVRLGKLRQDQFAYEEMRVLDVVMMGHTEMWAAMTERDAI
YANPEATEDDYMKAAELEAKFAEYDGYTAEAHAAELLSGVGISEDLHNATMAEVAPGFKLRVLLAQALFSKPDVLLLDEP
TNNLDINTIRWLEGVLNQYDSTMIIISHDRHFLNEVCTHMADLDYNTITIYPGNYDDYMLASAQSRERALKDNAKAKEKL
QELQEFVARFSANKSKARQATSRLKQADKIKSEMVEVKPSTRQNPYIRFEADEKAKLHRQAVEVEKLAKRFETQLFKNLN
FILEAGQRLAIIGPNGAGKSTLLKLLAGAYNPEYSDGLLPDEGTIKWAEKASVGYYPQDHENDFDVDMDLSEWMRQWGQE
GDDEQVIRGTLGRLLFGSNDVVKKVKVLSGGEKGRMLYGKLLLLKPNVLVMDEPTNHMDMESIESLNMALEKYNGTLIFV
SHDRQFVSSLATQIIELDGKGGYEHYLGDYESYLEKKGIA

Sequences:

>Translated_600_residues
MGCREGLSFGNLLSEIIKRIFYYKCLKICPSVSDGGAVMLQSENSKNLISCSIKALPIMISTNGITMQFGAKPLFENVSV
KFGEGNRYGLIGANGSGKSTFMKILGGDLEQTAGEVAIENGVRLGKLRQDQFAYEEMRVLDVVMMGHTEMWAAMTERDAI
YANPEATEDDYMKAAELEAKFAEYDGYTAEAHAAELLSGVGISEDLHNATMAEVAPGFKLRVLLAQALFSKPDVLLLDEP
TNNLDINTIRWLEGVLNQYDSTMIIISHDRHFLNEVCTHMADLDYNTITIYPGNYDDYMLASAQSRERALKDNAKAKEKL
QELQEFVARFSANKSKARQATSRLKQADKIKSEMVEVKPSTRQNPYIRFEADEKAKLHRQAVEVEKLAKRFETQLFKNLN
FILEAGQRLAIIGPNGAGKSTLLKLLAGAYNPEYSDGLLPDEGTIKWAEKASVGYYPQDHENDFDVDMDLSEWMRQWGQE
GDDEQVIRGTLGRLLFGSNDVVKKVKVLSGGEKGRMLYGKLLLLKPNVLVMDEPTNHMDMESIESLNMALEKYNGTLIFV
SHDRQFVSSLATQIIELDGKGGYEHYLGDYESYLEKKGIA
>Mature_599_residues
GCREGLSFGNLLSEIIKRIFYYKCLKICPSVSDGGAVMLQSENSKNLISCSIKALPIMISTNGITMQFGAKPLFENVSVK
FGEGNRYGLIGANGSGKSTFMKILGGDLEQTAGEVAIENGVRLGKLRQDQFAYEEMRVLDVVMMGHTEMWAAMTERDAIY
ANPEATEDDYMKAAELEAKFAEYDGYTAEAHAAELLSGVGISEDLHNATMAEVAPGFKLRVLLAQALFSKPDVLLLDEPT
NNLDINTIRWLEGVLNQYDSTMIIISHDRHFLNEVCTHMADLDYNTITIYPGNYDDYMLASAQSRERALKDNAKAKEKLQ
ELQEFVARFSANKSKARQATSRLKQADKIKSEMVEVKPSTRQNPYIRFEADEKAKLHRQAVEVEKLAKRFETQLFKNLNF
ILEAGQRLAIIGPNGAGKSTLLKLLAGAYNPEYSDGLLPDEGTIKWAEKASVGYYPQDHENDFDVDMDLSEWMRQWGQEG
DDEQVIRGTLGRLLFGSNDVVKKVKVLSGGEKGRMLYGKLLLLKPNVLVMDEPTNHMDMESIESLNMALEKYNGTLIFVS
HDRQFVSSLATQIIELDGKGGYEHYLGDYESYLEKKGIA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=552, Percent_Identity=28.6231884057971, Blast_Score=252, Evalue=5e-67,
Organism=Homo sapiens, GI10947137, Length=535, Percent_Identity=30.0934579439252, Blast_Score=236, Evalue=5e-62,
Organism=Homo sapiens, GI27881506, Length=535, Percent_Identity=30.0934579439252, Blast_Score=236, Evalue=6e-62,
Organism=Homo sapiens, GI10947135, Length=546, Percent_Identity=29.4871794871795, Blast_Score=201, Evalue=2e-51,
Organism=Homo sapiens, GI69354671, Length=546, Percent_Identity=29.4871794871795, Blast_Score=201, Evalue=2e-51,
Organism=Escherichia coli, GI1787041, Length=542, Percent_Identity=66.0516605166052, Blast_Score=729, Evalue=0.0,
Organism=Escherichia coli, GI1787182, Length=551, Percent_Identity=32.1234119782214, Blast_Score=253, Evalue=3e-68,
Organism=Escherichia coli, GI1789751, Length=538, Percent_Identity=30.6691449814126, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI2367384, Length=536, Percent_Identity=30.0373134328358, Blast_Score=236, Evalue=4e-63,
Organism=Escherichia coli, GI1786975, Length=532, Percent_Identity=23.6842105263158, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1788165, Length=202, Percent_Identity=29.7029702970297, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1787029, Length=234, Percent_Identity=26.4957264957265, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=31.5, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1786698, Length=200, Percent_Identity=30, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786398, Length=231, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789891, Length=222, Percent_Identity=26.5765765765766, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788761, Length=238, Percent_Identity=25.6302521008403, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081709, Length=216, Percent_Identity=23.6111111111111, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1789864, Length=219, Percent_Identity=26.027397260274, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1790525, Length=290, Percent_Identity=25.8620689655172, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787758, Length=250, Percent_Identity=25.2, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI87082267, Length=200, Percent_Identity=24, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=537, Percent_Identity=31.098696461825, Blast_Score=258, Evalue=7e-69,
Organism=Caenorhabditis elegans, GI17553372, Length=546, Percent_Identity=30.5860805860806, Blast_Score=254, Evalue=9e-68,
Organism=Caenorhabditis elegans, GI17559834, Length=584, Percent_Identity=28.5958904109589, Blast_Score=228, Evalue=8e-60,
Organism=Caenorhabditis elegans, GI17558664, Length=225, Percent_Identity=28.4444444444444, Blast_Score=72, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI115533592, Length=219, Percent_Identity=27.8538812785388, Blast_Score=67, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=529, Percent_Identity=30.812854442344, Blast_Score=252, Evalue=9e-68,
Organism=Saccharomyces cerevisiae, GI6321121, Length=584, Percent_Identity=28.5958904109589, Blast_Score=228, Evalue=3e-60,
Organism=Saccharomyces cerevisiae, GI6325030, Length=434, Percent_Identity=25.3456221198157, Blast_Score=121, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6323278, Length=424, Percent_Identity=24.5283018867925, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6324314, Length=426, Percent_Identity=24.8826291079812, Blast_Score=108, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24642252, Length=582, Percent_Identity=29.0378006872852, Blast_Score=247, Evalue=2e-65,
Organism=Drosophila melanogaster, GI18859989, Length=582, Percent_Identity=29.0378006872852, Blast_Score=247, Evalue=2e-65,
Organism=Drosophila melanogaster, GI24666836, Length=522, Percent_Identity=28.1609195402299, Blast_Score=239, Evalue=3e-63,
Organism=Drosophila melanogaster, GI24641342, Length=549, Percent_Identity=29.3260473588342, Blast_Score=231, Evalue=2e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 67084; Mature: 66953

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCREGLSFGNLLSEIIKRIFYYKCLKICPSVSDGGAVMLQSENSKNLISCSIKALPIMI
CCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEEEEEEE
STNGITMQFGAKPLFENVSVKFGEGNRYGLIGANGSGKSTFMKILGGDLEQTAGEVAIEN
ECCCEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHCCCHHHHHCHHHHHC
GVRLGKLRQDQFAYEEMRVLDVVMMGHTEMWAAMTERDAIYANPEATEDDYMKAAELEAK
CCEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHH
FAEYDGYTAEAHAAELLSGVGISEDLHNATMAEVAPGFKLRVLLAQALFSKPDVLLLDEP
HHHCCCCCCHHHHHHHHHCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEECC
TNNLDINTIRWLEGVLNQYDSTMIIISHDRHFLNEVCTHMADLDYNTITIYPGNYDDYML
CCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHE
ASAQSRERALKDNAKAKEKLQELQEFVARFSANKSKARQATSRLKQADKIKSEMVEVKPS
ECCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCC
TRQNPYIRFEADEKAKLHRQAVEVEKLAKRFETQLFKNLNFILEAGQRLAIIGPNGAGKS
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHH
TLLKLLAGAYNPEYSDGLLPDEGTIKWAEKASVGYYPQDHENDFDVDMDLSEWMRQWGQE
HHHHHHHHCCCCCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
GDDEQVIRGTLGRLLFGSNDVVKKVKVLSGGEKGRMLYGKLLLLKPNVLVMDEPTNHMDM
CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEECCCCCCCH
ESIESLNMALEKYNGTLIFVSHDRQFVSSLATQIIELDGKGGYEHYLGDYESYLEKKGIA
HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GCREGLSFGNLLSEIIKRIFYYKCLKICPSVSDGGAVMLQSENSKNLISCSIKALPIMI
CCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEEEEEEE
STNGITMQFGAKPLFENVSVKFGEGNRYGLIGANGSGKSTFMKILGGDLEQTAGEVAIEN
ECCCEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHCCCHHHHHCHHHHHC
GVRLGKLRQDQFAYEEMRVLDVVMMGHTEMWAAMTERDAIYANPEATEDDYMKAAELEAK
CCEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHH
FAEYDGYTAEAHAAELLSGVGISEDLHNATMAEVAPGFKLRVLLAQALFSKPDVLLLDEP
HHHCCCCCCHHHHHHHHHCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEECC
TNNLDINTIRWLEGVLNQYDSTMIIISHDRHFLNEVCTHMADLDYNTITIYPGNYDDYML
CCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHE
ASAQSRERALKDNAKAKEKLQELQEFVARFSANKSKARQATSRLKQADKIKSEMVEVKPS
ECCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCC
TRQNPYIRFEADEKAKLHRQAVEVEKLAKRFETQLFKNLNFILEAGQRLAIIGPNGAGKS
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHH
TLLKLLAGAYNPEYSDGLLPDEGTIKWAEKASVGYYPQDHENDFDVDMDLSEWMRQWGQE
HHHHHHHHCCCCCCCCCCCCCCCCEEEHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
GDDEQVIRGTLGRLLFGSNDVVKKVKVLSGGEKGRMLYGKLLLLKPNVLVMDEPTNHMDM
CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEECCCCCCCH
ESIESLNMALEKYNGTLIFVSHDRQFVSSLATQIIELDGKGGYEHYLGDYESYLEKKGIA
HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]