Click here to switch to the map view.

The map label for this gene is ysgA [H]

Identifier: 161870027

GI number: 161870027

Start: 1041874

End: 1042659

Strand: Direct

Name: ysgA [H]

Synonym: NMCC_1060

Alternate gene names: 161870027

Gene position: 1041874-1042659 (Clockwise)

Preceding gene: 161870026

Following gene: 161870028

Centisome position: 48.38

GC content: 56.23

Gene sequence:

>786_bases
GTGAAGCATATCAGTTCGGCAAACAATGAACACATCAGACACCTGCACCGCCTGTTGTCTCAAGGGAAGTTCAGACGGCA
ATACGCCCAAACCGTTTTGGAGGGCGTGCACCTGCTTCAGGTTTTCCTGCAATCCGGCGGAAGGCCAGTCGGGGTATATA
TTCCCGAAGCGAAAATGCCGTCTGAAGAAGTCCGTAAATTGACGGCGGTTTTGCCGGAAGACGGGGTTTTTTCCGTTTCA
GACGGCATATTGAAGAAAATCAGCAGCCTGACTTGCGCGGATGATGTGCTTGCGCTGATTGATATTCCGGATGCGGGTGC
TTTGCCGGCCGGCGGCGACTGTGTGGTTTTGGACGGCGTGCAAGATCCGGGCAATGTCGGCACGGTGTTGCGGAGCGCGG
CGGCGGCAGGAATCGGCGCGGTCGTTTTGGGCAAAGGTTGTGCGGACGCGTGGTCGCCCAAAGTGCTGCGAGCCGGAATG
GGCGCGCATTTCTTGTCGGAGATTTATCCGCAGGCGGATTTGGAAATATGGTTGGCGAGCTATAAAGGCCGTGTGTTTGC
CACCGCGTTGCGTGAGGAAAAACAGGCGGTTCTGTATAACGAAGATTTGCGCGAACCGACAGCCTGGGTGTTTGGCAACG
AAGGCGCGGGGGTCGGTAAAGCGGTTTTGGACAGGGCGGACAAGTGTGTCAGGATTCCGATGCACGATGCAACCGAGTCT
TTAAATGTCGCGATGGCGGCGACAATCTGCCTGTTTGAACAGATGCGGCAGCGGTCGGCGTATTGA

Upstream 100 bases:

>100_bases
TTTCAGACGGCATTTTGCCCGTCCATCCGGATTTTCCCGTTTTATTTTGATGGAATCGGAATCGCCGTTACCTATTATAT
ATTCTTGAAAAGGCGGTAAA

Downstream 100 bases:

>100_bases
GGAAAAGAAATGCCGTCTGAAAAAATCTATTACGGCGTATTGATTTTCTTATGTATCGCTTCTATGCTGCTGTCGCCGTT
TTTTTATGCGGGTGCTTTGA

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MKHISSANNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGRPVGVYIPEAKMPSEEVRKLTAVLPEDGVFSVS
DGILKKISSLTCADDVLALIDIPDAGALPAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGM
GAHFLSEIYPQADLEIWLASYKGRVFATALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES
LNVAMAATICLFEQMRQRSAY

Sequences:

>Translated_261_residues
MKHISSANNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGRPVGVYIPEAKMPSEEVRKLTAVLPEDGVFSVS
DGILKKISSLTCADDVLALIDIPDAGALPAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGM
GAHFLSEIYPQADLEIWLASYKGRVFATALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES
LNVAMAATICLFEQMRQRSAY
>Mature_261_residues
MKHISSANNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGRPVGVYIPEAKMPSEEVRKLTAVLPEDGVFSVS
DGILKKISSLTCADDVLALIDIPDAGALPAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGM
GAHFLSEIYPQADLEIWLASYKGRVFATALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES
LNVAMAATICLFEQMRQRSAY

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=297, Percent_Identity=31.6498316498317, Blast_Score=102, Evalue=5e-22,
Organism=Escherichia coli, GI1790623, Length=172, Percent_Identity=33.1395348837209, Blast_Score=81, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24666840, Length=274, Percent_Identity=28.1021897810219, Blast_Score=78, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28078; Mature: 28078

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHISSANNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGRPVGVYIPEAKMP
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
SEEVRKLTAVLPEDGVFSVSDGILKKISSLTCADDVLALIDIPDAGALPAGGDCVVLDGV
HHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEECCC
QDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQADLEIWLAS
CCCCHHHHHHHHHHHHCCCHHEECCCCCCCCCHHHHHHCCCHHHHHHHCCCCCHHHHEEH
YKGRVFATALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES
HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCHHEEECCCCCCHHH
LNVAMAATICLFEQMRQRSAY
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKHISSANNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGRPVGVYIPEAKMP
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
SEEVRKLTAVLPEDGVFSVSDGILKKISSLTCADDVLALIDIPDAGALPAGGDCVVLDGV
HHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEECCC
QDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQADLEIWLAS
CCCCHHHHHHHHHHHHCCCHHEECCCCCCCCCHHHHHHCCCHHHHHHHCCCCCHHHHEEH
YKGRVFATALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES
HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCHHEEECCCCCCHHH
LNVAMAATICLFEQMRQRSAY
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]