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The map label for this gene is sodB [H]

Identifier: 161869817

GI number: 161869817

Start: 850312

End: 850899

Strand: Reverse

Name: sodB [H]

Synonym: NMCC_0846

Alternate gene names: 161869817

Gene position: 850899-850312 (Counterclockwise)

Preceding gene: 161869828

Following gene: 161869814

Centisome position: 39.51

GC content: 52.72

Gene sequence:

>588_bases
ATGGAACATAAGCTGCCGCAACTGCCTTATGAACTGGACGCATTGTCCCCGCATCTGAGCAAAGAGACTTTGGAATTCCA
CTATGGCAAACACCATCAAACCTACATCACCAACCTGAACAATCAAATCAAAGGCACTGAATTTGAAAACCTGCCTTTGG
AAGAGATTGTGAAAAAATCTTCAGGCGGCGTGTTCAACAACGCAGCCCAAACTTGGAACCACACTTTCTACTGGCTGGGT
TTCACGTCCAAAGGTCAAGGCAAACCTGCCGGCAAACTGGCCGCCGCCATCGACGCGAAATGGGGCAGCTTCGAGAAATT
CCAAGAAGCGTTCAATGCCTGCGCGGCCGGTACTTTCGGCTCCGGTTGGGCGTGGCTGGTAAAAACCCCTGCCGGCGGAT
TGGATTTGGTTTCCACTTCCAACGCCGCTACGCCGCTGACCACTGAAAACACGCCGCTGCTGACCTGCGACGTGTGGGAA
CACGCCTATTACATCGACTACCGCAACAGCCGTCCCAACTACCTGAAAGGTTTCTGGGAAATCGTCAACTGGGACGAAGT
TGCCAAACGTTTTGCCGCCTTGTCCTGA

Upstream 100 bases:

>100_bases
TGGTTTCCATCCCTCAAAACAGGTAGAATGCGTGTGCTGCCGATTCGTTTGCAGCAACACTGCCAAAATACAACATTTAA
AACAATATTAGGAGCACAAA

Downstream 100 bases:

>100_bases
TTTTTGTTAATCCGCTATATCATTTCGGGTAGATTTTTGCGGTATTGAATTTCAGTCATTTCCGATAAATGCCTGCTGCT
TTTTATTTCTAGATTCCCAC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MEHKLPQLPYELDALSPHLSKETLEFHYGKHHQTYITNLNNQIKGTEFENLPLEEIVKKSSGGVFNNAAQTWNHTFYWLG
FTSKGQGKPAGKLAAAIDAKWGSFEKFQEAFNACAAGTFGSGWAWLVKTPAGGLDLVSTSNAATPLTTENTPLLTCDVWE
HAYYIDYRNSRPNYLKGFWEIVNWDEVAKRFAALS

Sequences:

>Translated_195_residues
MEHKLPQLPYELDALSPHLSKETLEFHYGKHHQTYITNLNNQIKGTEFENLPLEEIVKKSSGGVFNNAAQTWNHTFYWLG
FTSKGQGKPAGKLAAAIDAKWGSFEKFQEAFNACAAGTFGSGWAWLVKTPAGGLDLVSTSNAATPLTTENTPLLTCDVWE
HAYYIDYRNSRPNYLKGFWEIVNWDEVAKRFAALS
>Mature_195_residues
MEHKLPQLPYELDALSPHLSKETLEFHYGKHHQTYITNLNNQIKGTEFENLPLEEIVKKSSGGVFNNAAQTWNHTFYWLG
FTSKGQGKPAGKLAAAIDAKWGSFEKFQEAFNACAAGTFGSGWAWLVKTPAGGLDLVSTSNAATPLTTENTPLLTCDVWE
HAYYIDYRNSRPNYLKGFWEIVNWDEVAKRFAALS

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=203, Percent_Identity=38.9162561576355, Blast_Score=152, Evalue=2e-37,
Organism=Homo sapiens, GI67782305, Length=203, Percent_Identity=38.9162561576355, Blast_Score=152, Evalue=2e-37,
Organism=Homo sapiens, GI67782309, Length=195, Percent_Identity=35.3846153846154, Blast_Score=122, Evalue=2e-28,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=64.2487046632124, Blast_Score=261, Evalue=3e-71,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=44.9275362318841, Blast_Score=175, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI17506561, Length=202, Percent_Identity=38.6138613861386, Blast_Score=144, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=34.5, Blast_Score=127, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6321796, Length=203, Percent_Identity=36.9458128078818, Blast_Score=130, Evalue=2e-31,
Organism=Drosophila melanogaster, GI17136812, Length=196, Percent_Identity=36.734693877551, Blast_Score=137, Evalue=3e-33,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21892; Mature: 21892

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHKLPQLPYELDALSPHLSKETLEFHYGKHHQTYITNLNNQIKGTEFENLPLEEIVKKS
CCCCCCCCCCCHHHCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHC
SGGVFNNAAQTWNHTFYWLGFTSKGQGKPAGKLAAAIDAKWGSFEKFQEAFNACAAGTFG
CCCCCCCCHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
SGWAWLVKTPAGGLDLVSTSNAATPLTTENTPLLTCDVWEHAYYIDYRNSRPNYLKGFWE
CCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHH
IVNWDEVAKRFAALS
HCCHHHHHHHHHCCC
>Mature Secondary Structure
MEHKLPQLPYELDALSPHLSKETLEFHYGKHHQTYITNLNNQIKGTEFENLPLEEIVKKS
CCCCCCCCCCCHHHCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHC
SGGVFNNAAQTWNHTFYWLGFTSKGQGKPAGKLAAAIDAKWGSFEKFQEAFNACAAGTFG
CCCCCCCCHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
SGWAWLVKTPAGGLDLVSTSNAATPLTTENTPLLTCDVWEHAYYIDYRNSRPNYLKGFWE
CCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHH
IVNWDEVAKRFAALS
HCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8181762; 12910271 [H]