Click here to switch to the map view.

The map label for this gene is ccsA [H]

Identifier: 161869417

GI number: 161869417

Start: 441107

End: 442294

Strand: Direct

Name: ccsA [H]

Synonym: NMCC_0425

Alternate gene names: 161869417

Gene position: 441107-442294 (Clockwise)

Preceding gene: 161869416

Following gene: 161869418

Centisome position: 20.48

GC content: 52.61

Gene sequence:

>1188_bases
ATGACTGAACACTATAAAACCCTTCCGGAACACGAGCTGCTGATTCAGAAGTCTTTGATCAGCAATCTGAATCTTTGGGA
TTGGGTATTTGCCGTGCTGGTTTTTGCGGCTACGGTTTTCGTACAGACCCGTTCCGGTATGCATATGGACATTTACGAAA
CGGTCATGTTGTGGGCGAGTGCCGGTATTGCCGTGTTTTTGGGTTGGTTTTTCAAACCGATGCGCTGGTTTGTTCCTTTA
AGCGTATTGCTTGCCTATGCCGCCGTCGGTCTGTATGGCGGCAACATCAAATCGGCAGAGATTTTCCTGTTGCGGTATTT
CCTCAGCAGCCAGTCGGCGATCATGTGGCAGTGCGCCTTTGTCTTTTTCGCCCTGTTCGCCTATATTTCGGGCGCGGTTT
TGGCAAGCGTAAAAAATGTGCCGACCAACACGCTGTTGGGTATGGGAACCGTGTTTGCATGGGTGTCTGCCGTAGCAGGC
TTTACCGGTCTGCTGGTACGTTGGCACGAAAGCTATCTGCTCCGTCCCGATGCGGGGCATATTCCGGTTTCCAACCTGTA
TGAAGTGTTCATCCTGTTTTTGGTGATTACCGCGCTGATGTATCTTTATTATGAAGGTAAGTTCGCCATACAGAAATTGG
GCGGCTTCGTGTTCGGCTTTATGGCGGTCGTGGTTGGATTTGTCTTGTGGTACAGCGTGTCCCGCGAGGCGCATACCATC
CAGCCGCTGATTCCCGCGCTCCAGTCCTGGTGGATGAAAATCCACGTTCCGGCAAACTTTATCGGTTACGGCGCGTTTTG
CATTTCCGCGATGCTCGGTATTGCCGAACTGGTTTCCCTGCGTGCGGAAGGAAAAGGCGGAAAACTGTGGCTGCCGCCGT
CGGCATTGATCGACGAGGTGATGTATAAGGCGATTGCCGTCGGCTTTCTGTTCTTTACCATTGCCACCATTTTGGGTGCG
CTGTGGGCGGCAGATGCTTGGGGACGCTATTGGAGTTGGGATCCGAAAGAGACGTGGGCGTTCATCGTCTGGCTCAATTA
CGCCGTTTGGCTGCACTTGCGGCTGGTTGCCGGTTGGCGCGGCAAAGTGCTGGCGTGGTGGGCGATTATCGGTTTGTTCG
TAACCGCATTTGCCTTTATCGGCGTGAATATGTTTTTGAGCGGGCTGCATTCTTACGGAACGCTTTGA

Upstream 100 bases:

>100_bases
ATCCGTTTTGCCATGTCTTCGGCCCGCAGCGAACGGGATTTGCAGAAGGAATTTCCAAAACACGTCGAGAGTCTGCAACG
GCTCGGCAAGGACTTGAATC

Downstream 100 bases:

>100_bases
TACGGTGCGACGATGCCGTCTGAACGGTCTTCAGACGGCATGTTCCGTTTTTGGGATACGGCAGTCGTGCCGAAATCCGC
TAAAATACGTTTTTCAGTTT

Product: cytochrome c-type biogenesis protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MTEHYKTLPEHELLIQKSLISNLNLWDWVFAVLVFAATVFVQTRSGMHMDIYETVMLWASAGIAVFLGWFFKPMRWFVPL
SVLLAYAAVGLYGGNIKSAEIFLLRYFLSSQSAIMWQCAFVFFALFAYISGAVLASVKNVPTNTLLGMGTVFAWVSAVAG
FTGLLVRWHESYLLRPDAGHIPVSNLYEVFILFLVITALMYLYYEGKFAIQKLGGFVFGFMAVVVGFVLWYSVSREAHTI
QPLIPALQSWWMKIHVPANFIGYGAFCISAMLGIAELVSLRAEGKGGKLWLPPSALIDEVMYKAIAVGFLFFTIATILGA
LWAADAWGRYWSWDPKETWAFIVWLNYAVWLHLRLVAGWRGKVLAWWAIIGLFVTAFAFIGVNMFLSGLHSYGTL

Sequences:

>Translated_395_residues
MTEHYKTLPEHELLIQKSLISNLNLWDWVFAVLVFAATVFVQTRSGMHMDIYETVMLWASAGIAVFLGWFFKPMRWFVPL
SVLLAYAAVGLYGGNIKSAEIFLLRYFLSSQSAIMWQCAFVFFALFAYISGAVLASVKNVPTNTLLGMGTVFAWVSAVAG
FTGLLVRWHESYLLRPDAGHIPVSNLYEVFILFLVITALMYLYYEGKFAIQKLGGFVFGFMAVVVGFVLWYSVSREAHTI
QPLIPALQSWWMKIHVPANFIGYGAFCISAMLGIAELVSLRAEGKGGKLWLPPSALIDEVMYKAIAVGFLFFTIATILGA
LWAADAWGRYWSWDPKETWAFIVWLNYAVWLHLRLVAGWRGKVLAWWAIIGLFVTAFAFIGVNMFLSGLHSYGTL
>Mature_394_residues
TEHYKTLPEHELLIQKSLISNLNLWDWVFAVLVFAATVFVQTRSGMHMDIYETVMLWASAGIAVFLGWFFKPMRWFVPLS
VLLAYAAVGLYGGNIKSAEIFLLRYFLSSQSAIMWQCAFVFFALFAYISGAVLASVKNVPTNTLLGMGTVFAWVSAVAGF
TGLLVRWHESYLLRPDAGHIPVSNLYEVFILFLVITALMYLYYEGKFAIQKLGGFVFGFMAVVVGFVLWYSVSREAHTIQ
PLIPALQSWWMKIHVPANFIGYGAFCISAMLGIAELVSLRAEGKGGKLWLPPSALIDEVMYKAIAVGFLFFTIATILGAL
WAADAWGRYWSWDPKETWAFIVWLNYAVWLHLRLVAGWRGKVLAWWAIIGLFVTAFAFIGVNMFLSGLHSYGTL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 44457; Mature: 44326

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00019 ACTININ_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TEHYKTLPEHELLIQKSLISNLNLWDWVFAVLVFAATVFVQTRSGMHMDIYETVMLWAS
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH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CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA