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The map label for this gene is farR [H]

Identifier: 161869372

GI number: 161869372

Start: 383242

End: 383619

Strand: Direct

Name: farR [H]

Synonym: NMCC_0379

Alternate gene names: 161869372

Gene position: 383242-383619 (Clockwise)

Preceding gene: 161869371

Following gene: 161869373

Centisome position: 17.8

GC content: 52.12

Gene sequence:

>378_bases
ATGACCCAATTCAGGCCTATTCTGAATCAGGCGAATATTACCGATCAGCAATGGCGGATTATCCGTCTTTTGGCGGAAAA
CGGCACGCTGGACTTTCAAGATTTGGCGAATCAGGCGTGTATTCTGCGCCCCAGCCTGACCGGTATCCTGACCCGCCTTG
AAAAAGCGGGTTTGGTTGTCCGCCTGAAACCTTCCAACGACCAACGACGTGTTTTTCTGAAGCTGACTGCCGAGGGCGAG
AAGCTGTATGAGGAAATCGGCGAAGAAGTGGACGAGCGTTACGACGCTATCGAGGAAGTGCTGGGCCGCGAGAAAATGCT
GCTGCTTAAAGACCTGTTGGCAGAACTTGCCAAAATCGAGGATGCGTTGAACTCGTAA

Upstream 100 bases:

>100_bases
TGAAAGTTTGATTTTCGATAACTTGGAGACTTGAACAATGCCTACCCAATCAAAACATGCGTCTATCAATATCAGTCTGA
TACAGGCAAGGGAAGCCCTG

Downstream 100 bases:

>100_bases
TACGCCGTAACGCGCGGAAACGTCCGACCGACGGCTTTTTGAATCAGAACTGCTGCACATGGGGGGTGCCTTGTGTGCAG
CATTCTTATATAGGGGACAG

Product: regulator of the fatty acid efflux pump system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MTQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGE
KLYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIEDALNS

Sequences:

>Translated_125_residues
MTQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGE
KLYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIEDALNS
>Mature_124_residues
TQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEK
LYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIEDALNS

Specific function: Repressor for the homoprotocatechuate catabolic pathway hpc operon [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012712
- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 14323; Mature: 14192

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVV
CCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCEEECCHHHHHHHHHHHCCEEE
RLKPSNDQRRVFLKLTAEGEKLYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIE
EECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DALNS
HHHCC
>Mature Secondary Structure 
TQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVV
CCCHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCEEECCHHHHHHHHHHHCCEEE
RLKPSNDQRRVFLKLTAEGEKLYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIE
EECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DALNS
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8384293; 8550403 [H]