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The map label for this gene is yrbD [C]

Identifier: 161869246

GI number: 161869246

Start: 267799

End: 268293

Strand: Direct

Name: yrbD [C]

Synonym: NMCC_0251

Alternate gene names: 161869246

Gene position: 267799-268293 (Clockwise)

Preceding gene: 161869245

Following gene: 161869247

Centisome position: 12.44

GC content: 56.97

Gene sequence:

>495_bases
ATGAAAAAGAACATATTGGAATTTTGGGTCGGACTGTTCGTCCTGATTGGCGCGGCGGCGGTCGGCTTTCTCGCTTTCCG
CGTGGCGGGCGGTGCGGCGTTCGGCGGTTCGGACAAAACTTACGCCGTTTATGCCGATTTCGGCGACATCGGCGGTTTGA
AGGTCAATGCCCCCGTCAAATCCGCAGGCGTATTGGTCGGGCGCGTCGGCGCTATCGGACTTGACCCGAAATCCTATCAG
GCGAGGGTGCGCCTCGATTTGGACGGCAAGTATCAGTTCAGCAGCGACGTTTCCGCGCAAATCCTGACTTCGGGACTTTT
GGGCGAGCAGTACATCGGGCTGCAGCAGGGCGGCGACACGGAAAACCTTGCTGCCGGCGACACCATCTCCGTAACCAGTT
CTGCAATGGTTCTGGAAAACCTTATCGGCAAATTCATGACGAGTTTTGCCGAGAAAAATGCCGACGGCGGCAATGCGGAA
AAAGCCGCCGAATAA

Upstream 100 bases:

>100_bases
CGATTTTGGCGGTCGATTTTATATTGACCGCGTGGATGTTTACAGATTGACAGGCCGTCTGAAGACGAAACGCGGAACAT
CGGATATTCAAGGAACTTTA

Downstream 100 bases:

>100_bases
ACGTATGCCATCATATTCAAACTAGGACACTTAATTATGAAAAAATCCTCCCTCATCAGCGCATTGGGCATCGGTATTTT
GAGCATCGGCATGGCATTTG

Product: putative ABC transport system substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MKKNILEFWVGLFVLIGAAAVGFLAFRVAGGAAFGGSDKTYAVYADFGDIGGLKVNAPVKSAGVLVGRVGAIGLDPKSYQ
ARVRLDLDGKYQFSSDVSAQILTSGLLGEQYIGLQQGGDTENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNADGGNAE
KAAE

Sequences:

>Translated_164_residues
MKKNILEFWVGLFVLIGAAAVGFLAFRVAGGAAFGGSDKTYAVYADFGDIGGLKVNAPVKSAGVLVGRVGAIGLDPKSYQ
ARVRLDLDGKYQFSSDVSAQILTSGLLGEQYIGLQQGGDTENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNADGGNAE
KAAE
>Mature_164_residues
MKKNILEFWVGLFVLIGAAAVGFLAFRVAGGAAFGGSDKTYAVYADFGDIGGLKVNAPVKSAGVLVGRVGAIGLDPKSYQ
ARVRLDLDGKYQFSSDVSAQILTSGLLGEQYIGLQQGGDTENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNADGGNAE
KAAE

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=169, Percent_Identity=44.9704142011834, Blast_Score=123, Evalue=6e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 16948; Mature: 16948

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNILEFWVGLFVLIGAAAVGFLAFRVAGGAAFGGSDKTYAVYADFGDIGGLKVNAPVK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCCCEEECCCCC
SAGVLVGRVGAIGLDPKSYQARVRLDLDGKYQFSSDVSAQILTSGLLGEQYIGLQQGGDT
CCCEEEECCCEECCCCCCCEEEEEEEECCCEEECCCCHHHHHHHHCCCHHHCCCCCCCCC
ENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNADGGNAEKAAE
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKKNILEFWVGLFVLIGAAAVGFLAFRVAGGAAFGGSDKTYAVYADFGDIGGLKVNAPVK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCCCEEECCCCC
SAGVLVGRVGAIGLDPKSYQARVRLDLDGKYQFSSDVSAQILTSGLLGEQYIGLQQGGDT
CCCEEEECCCEECCCCCCCEEEEEEEECCCEEECCCCHHHHHHHHCCCHHHCCCCCCCCC
ENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNADGGNAEKAAE
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]