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The map label for this gene is atpD-1 [H]

Identifier: 161611218

GI number: 161611218

Start: 601055

End: 602428

Strand: Reverse

Name: atpD-1 [H]

Synonym: MHJ_0475

Alternate gene names: 161611218

Gene position: 602428-601055 (Counterclockwise)

Preceding gene: 71893827

Following gene: 71893825

Centisome position: 67.13

GC content: 36.03

Gene sequence:

>1374_bases
ATGGTTGGCTATATATCACAGATCTGGACAAACGTTGCTGAGATCAAATTCACAAGTGAATTGGAAAAAATTCAGCTCGA
ACAAGCATTAGTTATGCATGAAAACCGCACGGTTTTAATTATTAAAAAAATTCTTAATCATAATACTGTCAGGGCGGTTG
TAATTGCCAAAGCGGCTCCAATTGCAGTTGGCTCACAAGTAATAAATACTCTTAATTTTTTACAAGTACCGGTTGGTCCT
TCAGCAAAAAATCAAGTTTTTAACATTTTAGGGCAATCCCAAAATACACCACAATATCGACCAAGAACAATTCCGATTAA
CTCGATAATTAATGTTGGAAAAGAAAATTTTAGCATTAGACATAAATTATTAGAGACCGGAATTAAGGCGCTTGATTTTT
TTGTGCCGATTTTTGAAGGGTATAAAATCGGGATTTTTGGTGGAGCCGGGGTTGGTAAAACCGTTTTAATGAAGGAAATT
ATTTTTAATGTTTCTAAACAAAGACAGAAAGTTTCTTCAATTTTTGTTGGTTCAGGAGAACGTTCCCGTGAAGGTCTAGA
GTTATTTTTAGAACTAAAAGAGTCAAATTTAATGGCAAAATCAACAATGTTTGTGGCCCAGATGAACGAAACTCCTGGCG
CTCGTTCGATGATAGTGCCAATGGGGGTAACAGCGGCTGAATATGCCCGTGATTATGAAAAAGAAGATGTGCTTTTATTT
ATCGATAATATTTATCGGTTTATTCAGGCAACAAATGAGGTTTCTTCTGCCCTTGAAAAAAATGTTTCAATCGGAGGTTA
CCATGCAACAATGGCTTCCGATGTTGCTTTTATTCAGGACAGACTTTTTAAAAATGAAAACGGATCAATTACTTCATTTC
AAACTGTTTTTCTCCCGATGGATGACCTCTCTGATCCAGCTGCAATTTCACTTTTTACTCACCTTGATTCATCATTTGTG
CTCTCCCGTGATAAAATGTCTCGTAATATTTTCCCGGCTTTTGACCCACTTGTTTCAACTTCAAATTCAGTCTCTGTTAA
TATAATTGGTGAAAGACATTTTAATGCAATTATTGCGGCTAAATCAATTATGAAAAAATATAAGGATTTAGAGGATGTTA
TCTTAATTTTAGGTTTTGACGAGCTTGATGCCGAGAGCAAAATTATCGTAAGAAAAGCGCTCCAGCTCGAAAACTTTTTC
ACCCAGAATTTCTTTATGGCAGCCGCGTTTACCAAGGAACCCGGAGTATATGTCCCACTTGAAAAGACAATTGATTCAGT
AATCCGTATCATTAACGGTGAATTTTTAGATGTCTCCCCAAGTGAGTTTGCTTTTATAGGTTCAGTTGACGACCTTTTCA
AAAAAGAAAGCTAA

Upstream 100 bases:

>100_bases
CACTAACTCAGTTGGAAATTCCCCTTAGTTTTCCGAAAATGGAAGAGAGCTTACTTGATAATATCATTAAAAAATCGCAG
ACAATTGGAGGTAGATAAAA

Downstream 100 bases:

>100_bases
TCAATCTTACCTAATATTAATAAAAAAGCTAATAAATTTCAAAAAATAATAAAAAAGGCCAGAAATTCCTATTTTTCTCC
TTTTTTAAAATTTTTGTATT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 2; F-ATPase subunit beta 2 [H]

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MVGYISQIWTNVAEIKFTSELEKIQLEQALVMHENRTVLIIKKILNHNTVRAVVIAKAAPIAVGSQVINTLNFLQVPVGP
SAKNQVFNILGQSQNTPQYRPRTIPINSIINVGKENFSIRHKLLETGIKALDFFVPIFEGYKIGIFGGAGVGKTVLMKEI
IFNVSKQRQKVSSIFVGSGERSREGLELFLELKESNLMAKSTMFVAQMNETPGARSMIVPMGVTAAEYARDYEKEDVLLF
IDNIYRFIQATNEVSSALEKNVSIGGYHATMASDVAFIQDRLFKNENGSITSFQTVFLPMDDLSDPAAISLFTHLDSSFV
LSRDKMSRNIFPAFDPLVSTSNSVSVNIIGERHFNAIIAAKSIMKKYKDLEDVILILGFDELDAESKIIVRKALQLENFF
TQNFFMAAAFTKEPGVYVPLEKTIDSVIRIINGEFLDVSPSEFAFIGSVDDLFKKES

Sequences:

>Translated_457_residues
MVGYISQIWTNVAEIKFTSELEKIQLEQALVMHENRTVLIIKKILNHNTVRAVVIAKAAPIAVGSQVINTLNFLQVPVGP
SAKNQVFNILGQSQNTPQYRPRTIPINSIINVGKENFSIRHKLLETGIKALDFFVPIFEGYKIGIFGGAGVGKTVLMKEI
IFNVSKQRQKVSSIFVGSGERSREGLELFLELKESNLMAKSTMFVAQMNETPGARSMIVPMGVTAAEYARDYEKEDVLLF
IDNIYRFIQATNEVSSALEKNVSIGGYHATMASDVAFIQDRLFKNENGSITSFQTVFLPMDDLSDPAAISLFTHLDSSFV
LSRDKMSRNIFPAFDPLVSTSNSVSVNIIGERHFNAIIAAKSIMKKYKDLEDVILILGFDELDAESKIIVRKALQLENFF
TQNFFMAAAFTKEPGVYVPLEKTIDSVIRIINGEFLDVSPSEFAFIGSVDDLFKKES
>Mature_457_residues
MVGYISQIWTNVAEIKFTSELEKIQLEQALVMHENRTVLIIKKILNHNTVRAVVIAKAAPIAVGSQVINTLNFLQVPVGP
SAKNQVFNILGQSQNTPQYRPRTIPINSIINVGKENFSIRHKLLETGIKALDFFVPIFEGYKIGIFGGAGVGKTVLMKEI
IFNVSKQRQKVSSIFVGSGERSREGLELFLELKESNLMAKSTMFVAQMNETPGARSMIVPMGVTAAEYARDYEKEDVLLF
IDNIYRFIQATNEVSSALEKNVSIGGYHATMASDVAFIQDRLFKNENGSITSFQTVFLPMDDLSDPAAISLFTHLDSSFV
LSRDKMSRNIFPAFDPLVSTSNSVSVNIIGERHFNAIIAAKSIMKKYKDLEDVILILGFDELDAESKIIVRKALQLENFF
TQNFFMAAAFTKEPGVYVPLEKTIDSVIRIINGEFLDVSPSEFAFIGSVDDLFKKES

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=461, Percent_Identity=38.3947939262473, Blast_Score=323, Evalue=2e-88,
Organism=Homo sapiens, GI19913424, Length=313, Percent_Identity=26.8370607028754, Blast_Score=93, Evalue=4e-19,
Organism=Escherichia coli, GI1790170, Length=467, Percent_Identity=36.6167023554604, Blast_Score=311, Evalue=5e-86,
Organism=Escherichia coli, GI1788251, Length=347, Percent_Identity=26.2247838616715, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1790172, Length=329, Percent_Identity=23.7082066869301, Blast_Score=76, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI25144756, Length=472, Percent_Identity=37.9237288135593, Blast_Score=327, Evalue=1e-89,
Organism=Caenorhabditis elegans, GI17565854, Length=380, Percent_Identity=24.4736842105263, Blast_Score=92, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17570191, Length=300, Percent_Identity=22.3333333333333, Blast_Score=69, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6322581, Length=461, Percent_Identity=36.4425162689805, Blast_Score=314, Evalue=2e-86,
Organism=Saccharomyces cerevisiae, GI6319603, Length=356, Percent_Identity=23.876404494382, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6319370, Length=400, Percent_Identity=22, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=38.9247311827957, Blast_Score=324, Evalue=7e-89,
Organism=Drosophila melanogaster, GI24638766, Length=462, Percent_Identity=38.3116883116883, Blast_Score=320, Evalue=1e-87,
Organism=Drosophila melanogaster, GI20129479, Length=325, Percent_Identity=28.3076923076923, Blast_Score=92, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24583988, Length=368, Percent_Identity=25.2717391304348, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24583986, Length=368, Percent_Identity=25.2717391304348, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24583984, Length=368, Percent_Identity=25.2717391304348, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24583992, Length=313, Percent_Identity=25.2396166134185, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI281361666, Length=244, Percent_Identity=25, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24646341, Length=244, Percent_Identity=25, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI17136796, Length=244, Percent_Identity=25, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50926; Mature: 50926

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGYISQIWTNVAEIKFTSELEKIQLEQALVMHENRTVLIIKKILNHNTVRAVVIAKAAP
CCCCHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCEEEEEEEECCC
IAVGSQVINTLNFLQVPVGPSAKNQVFNILGQSQNTPQYRPRTIPINSIINVGKENFSIR
HHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCCCCCCCEECHHHHHHCCCCCHHHH
HKLLETGIKALDFFVPIFEGYKIGIFGGAGVGKTVLMKEIIFNVSKQRQKVSSIFVGSGE
HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCC
RSREGLELFLELKESNLMAKSTMFVAQMNETPGARSMIVPMGVTAAEYARDYEKEDVLLF
CCHHHHHHHHHHHHCCCEEHHEEEEEEECCCCCCCEEEEECCCCHHHHHHCCCCCCEEEE
IDNIYRFIQATNEVSSALEKNVSIGGYHATMASDVAFIQDRLFKNENGSITSFQTVFLPM
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEC
DDLSDPAAISLFTHLDSSFVLSRDKMSRNIFPAFDPLVSTSNSVSVNIIGERHFNAIIAA
CCCCCCHHHHHHHHCCCHHEEEHHHHCCCCCCCCCHHHCCCCCEEEEEEECCHHHHHHHH
KSIMKKYKDLEDVILILGFDELDAESKIIVRKALQLENFFTQNFFMAAAFTKEPGVYVPL
HHHHHHHCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEEECCCCEEECH
EKTIDSVIRIINGEFLDVSPSEFAFIGSVDDLFKKES
HHHHHHHHHHHCCCEEECCCCCEEEECCHHHHHCCCC
>Mature Secondary Structure
MVGYISQIWTNVAEIKFTSELEKIQLEQALVMHENRTVLIIKKILNHNTVRAVVIAKAAP
CCCCHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCEEEEEEEECCC
IAVGSQVINTLNFLQVPVGPSAKNQVFNILGQSQNTPQYRPRTIPINSIINVGKENFSIR
HHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCCCCCCCEECHHHHHHCCCCCHHHH
HKLLETGIKALDFFVPIFEGYKIGIFGGAGVGKTVLMKEIIFNVSKQRQKVSSIFVGSGE
HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCC
RSREGLELFLELKESNLMAKSTMFVAQMNETPGARSMIVPMGVTAAEYARDYEKEDVLLF
CCHHHHHHHHHHHHCCCEEHHEEEEEEECCCCCCCEEEEECCCCHHHHHHCCCCCCEEEE
IDNIYRFIQATNEVSSALEKNVSIGGYHATMASDVAFIQDRLFKNENGSITSFQTVFLPM
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEC
DDLSDPAAISLFTHLDSSFVLSRDKMSRNIFPAFDPLVSTSNSVSVNIIGERHFNAIIAA
CCCCCCHHHHHHHHCCCHHEEEHHHHCCCCCCCCCHHHCCCCCEEEEEEECCHHHHHHHH
KSIMKKYKDLEDVILILGFDELDAESKIIVRKALQLENFFTQNFFMAAAFTKEPGVYVPL
HHHHHHHCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEEECCCCEEECH
EKTIDSVIRIINGEFLDVSPSEFAFIGSVDDLFKKES
HHHHHHHHHHHCCCEEECCCCCEEEECCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11353084 [H]