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The map label for this gene is rpoE [H]

Identifier: 161525703

GI number: 161525703

Start: 2751357

End: 2751872

Strand: Reverse

Name: rpoE [H]

Synonym: Bmul_2534

Alternate gene names: 161525703

Gene position: 2751872-2751357 (Counterclockwise)

Preceding gene: 161525704

Following gene: 161525702

Centisome position: 79.8

GC content: 70.16

Gene sequence:

>516_bases
ATGAGCTACGAATCGGACCTGCTGGTGTGGCTGCCGCATCTGACGCGGTATGCGCGCGCGCTGACGGGCGATCGGGCCTG
GGCGGACGATCTCGTGCAGGACACGCTCGAGCGCGCGCTGAACCGGCCGCCGCGCGATGCCGGCAATCTGCGCGCGTGGC
TGCTGACGCTGCTGCGTCACCGCTTCATCGATCAGTTGCGCGCGCGGCATGAAGTCGCCGTCGACGACGCGACGGCGCCA
TGGCAGACGCTCGCCGCGCCGCCCGGCGACGTGGGCGGCCTGATGCTGCGCGACGTGCAGCGCGCGCTGTACCGGCTACC
GGTCGAGCAGCGCGAGGTGCTTCTGCTGGTCGCGCTCGAAGAGCTGAGCTACCGCGATGCCGCGCAGGTGCTCGGCGTGC
CGGTCGGTACGGTGATGTCGCGGTTATCGCGCGCGAGAGAGCAGATGCGGGCGCTGCTGTCCGGCGAACCGGTCACGCAT
GGCACGGCCGCGTTACGGGTGATCAGGAAGACATGA

Upstream 100 bases:

>100_bases
GAAGATGGATCGCAAGGCCGGCGATGCGGGCGGCGAGGGCGTCGGCGGCGTCTGGCACGTCGCGCATCCGTGACGGCCGC
GCCGCGCGCGGGATCGTCGC

Downstream 100 bases:

>100_bases
TGGACGAGTCGCGCACACCTTCGGACGATCGGGACGACGAAGCGTCGGCGCAGCTACTGTCGGCGCTGCTCGACGGCGAG
CTGTCCGCGCACGAACGCCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDAGNLRAWLLTLLRHRFIDQLRARHEVAVDDATAP
WQTLAAPPGDVGGLMLRDVQRALYRLPVEQREVLLLVALEELSYRDAAQVLGVPVGTVMSRLSRAREQMRALLSGEPVTH
GTAALRVIRKT

Sequences:

>Translated_171_residues
MSYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDAGNLRAWLLTLLRHRFIDQLRARHEVAVDDATAP
WQTLAAPPGDVGGLMLRDVQRALYRLPVEQREVLLLVALEELSYRDAAQVLGVPVGTVMSRLSRAREQMRALLSGEPVTH
GTAALRVIRKT
>Mature_170_residues
SYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDAGNLRAWLLTLLRHRFIDQLRARHEVAVDDATAPW
QTLAAPPGDVGGLMLRDVQRALYRLPVEQREVLLLVALEELSYRDAAQVLGVPVGTVMSRLSRAREQMRALLSGEPVTHG
TAALRVIRKT

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19278; Mature: 19146

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDAGNLRAWLLTLLRH
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
RFIDQLRARHEVAVDDATAPWQTLAAPPGDVGGLMLRDVQRALYRLPVEQREVLLLVALE
HHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELSYRDAAQVLGVPVGTVMSRLSRAREQMRALLSGEPVTHGTAALRVIRKT
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDAGNLRAWLLTLLRH
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
RFIDQLRARHEVAVDDATAPWQTLAAPPGDVGGLMLRDVQRALYRLPVEQREVLLLVALE
HHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELSYRDAAQVLGVPVGTVMSRLSRAREQMRALLSGEPVTHGTAALRVIRKT
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]