Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 161525692

GI number: 161525692

Start: 2742538

End: 2742987

Strand: Reverse

Name: yqgF [C]

Synonym: Bmul_2523

Alternate gene names: 161525692

Gene position: 2742987-2742538 (Counterclockwise)

Preceding gene: 161525693

Following gene: 161525691

Centisome position: 79.54

GC content: 67.33

Gene sequence:

>450_bases
ATGAGCGGCACGAGCGCGCGCGATGCGACGCTCCTGGCGTTCGACTACGGCGAGAAGCGAATCGGTGTCGCGATCGGCAA
CGCGCTGACGCGCTCCGCGCGCGCGCTCGTCGTAATTCCCAACCTGAACCGCGAACACCGCTTCAAGGCCGTCGGCGAAC
TGCTCGCCGAATGGCGGCCCGATGCGCTCGTCGTCGGGCTGCCGATGCATCCCGACGGCACGCCGCACGACATGACGCAG
CAGGCGAAGCGCTTCGGCAACCAGCTGAACGGCCGCTTCGGGCTGCCCGTCACGTGGGTCGACGAACGCTATTCGTCGGT
CGAAGCCGAGGCCGGGATGCGCGAGCGCAACGTGCGCGGCCGCGCACGCACCGACATGCTCGACGCCGAAGCCGCGCGCG
TGATCCTTCAACAGTATCTCGATCAATTGTCCGACCATGAGCCCCATTGA

Upstream 100 bases:

>100_bases
CGCGCATCGTGTTCGACACGCCGGCCGAAGAGCGCTTCGAAGCCGCGCTCGGCCTGCTCGGCGTCAGTTCGTCGACGCTG
TCCGGCGAAGCAGGGCACGC

Downstream 100 bases:

>100_bases
CGCCGAGGCGCTGTACCGCGCCCTGCTCGACCAGATCCGTGCCGCGTACGGCACCGCGTTCGCCGAACCGGGCGGCCCGC
GGCTCGCCGGCATCTACAGC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPDALVVGLPMHPDGTPHDMTQ
QAKRFGNQLNGRFGLPVTWVDERYSSVEAEAGMRERNVRGRARTDMLDAEAARVILQQYLDQLSDHEPH

Sequences:

>Translated_149_residues
MSGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPDALVVGLPMHPDGTPHDMTQ
QAKRFGNQLNGRFGLPVTWVDERYSSVEAEAGMRERNVRGRARTDMLDAEAARVILQQYLDQLSDHEPH
>Mature_148_residues
SGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRPDALVVGLPMHPDGTPHDMTQQ
AKRFGNQLNGRFGLPVTWVDERYSSVEAEAGMRERNVRGRARTDMLDAEAARVILQQYLDQLSDHEPH

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=134, Percent_Identity=41.044776119403, Blast_Score=110, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 16633; Mature: 16502

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP
CCCCCCCCEEEEEEECCCCEEHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCC
DALVVGLPMHPDGTPHDMTQQAKRFGNQLNGRFGLPVTWVDERYSSVEAEAGMRERNVRG
CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCCHHHCCCC
RARTDMLDAEAARVILQQYLDQLSDHEPH
CHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SGTSARDATLLAFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGELLAEWRP
CCCCCCCEEEEEEECCCCEEHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCC
DALVVGLPMHPDGTPHDMTQQAKRFGNQLNGRFGLPVTWVDERYSSVEAEAGMRERNVRG
CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCCHHHCCCC
RARTDMLDAEAARVILQQYLDQLSDHEPH
CHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA