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The map label for this gene is yfdE [H]

Identifier: 161525079

GI number: 161525079

Start: 2086229

End: 2087587

Strand: Direct

Name: yfdE [H]

Synonym: Bmul_1907

Alternate gene names: 161525079

Gene position: 2086229-2087587 (Clockwise)

Preceding gene: 161525077

Following gene: 161525082

Centisome position: 60.5

GC content: 69.76

Gene sequence:

>1359_bases
ATGCGATTCCCGGCAAAGCGGCTCGACGCTCCGGCCGGCCCCACGGGGCCACCGGCGGCGCCGATTCGCCTTAAGATGCT
CGGCATGCCAATTCGCCTTGCCGCGCAAGGCCACGCCATGAAAGGAGACGATTCGACGATGGGTGCCCTGAGCCATATCC
GCGTGCTGGACCTGACCCGCGTGCTCGCGGGCCCGTGGTGCGCGCAGACGCTCGCCGACTTCGGCGCCGACGTGATCAAG
ATCGAGCGCCCGGGCGCCGGCGACGACACGCGCCACTGGGGGCCGCCCTACCTGAAGGACGCGCACGGCGCCGACACCGC
CGAGGCCGCCTACTATCTCGCGGCGAACCGCAACAAGCGCTCGGTGACGGTCGACATCGCGACCCCCGAAGGCCAGCAGA
TCGTGCGCGAGCTGGCCGCGCAGAGCGACGTCGTGCTCGAGAACTACAAGGTCGGCCAGTTGAAGAAATACGGGCTCGAC
TATGCCTCGCTGCGCGCCGTGAAGCCCGATCTCGTCTACTGCTCGGTGACGGGCTTCGGCCAGACCGGCCCGTACGCGCA
TCGCGCGGGCTACGACTTCATCGTGCAGGGGATCGGCGGCTTCATGAGCATCACGGGCGAGCGCGACGGCGTGCCGGGCG
GCGGCCCGCAGAAGGCCGGCGTCGCGATCGCCGATCTCGCGACCGGCCTCTATTCGACGATCGCGGTGCTCGCCGCGCTC
GCACATCGCGACCGCACCGGCGAAGGCCAGTACATCGACATGGCGCTGCTCGACGTGCAGGTCGCGCTGCTCGCGAACAT
GAACACGAACTTCCTCGCGAGCGGCACGCCGCCCGTGCGCTGGGGCAACGCGCATCCGAACATCGTGCCGTACCAGACGT
TCCAGACGAGCGACGGCTGGATCATCGTCGCGGTCGGCAACGACGGGCAGTTCCGCAAGTTCGTCGAAGCCGGCGGGCGG
CCGGAACTCGCCGACGACGAACGCTTCGCGACCAATCCCGCGCGCGTGCGCCATCGCGACACGCTGGTGCCGATCCTTGC
GGAGATGGTCAAGACGCGCAGCAAGACGGCATGGATCGACGCGCTCGAGGCGGCCGGCGTGCCGTGCGGGCCGATCAACG
ATCTGGCCGAGGTGTTCGCGAACGAGCAGGTCGTCGCGCGCGGCATGGAAGTCGCGCTGCCGCATCCGTGCGGCGCGGAC
GTGAAGCTCGTGCGCAATCCGGTGCGGATGAGCGCGACGCCGCCCGATGCGCGCACCGCCCCGCCGCTGCTCGGCGCGCA
CACCGACGACGTGCTGCGCGACATGCTCGGCTACGACGATGCGCGGATCGCGGCGCTGAAGGCGAAGCAGGCGATCTGA

Upstream 100 bases:

>100_bases
ATGGCGTGCGGGGACAGTCTGCTAAGACGGCTTCAAACGCCGGCGGCCGTTGCGGACGCGCGGCGGCATGGTTCGGAAAC
GATCGATTATACGGGATTGA

Downstream 100 bases:

>100_bases
GCGGCGCGGCGCTCGCCACTCAGGCGGGCCAGGCGTATGCGCGGGCACTGCGTTGGCGCGCCGCCGAAGCGCCATCGGGC
CCGGCGGTCGCGCCGGCGCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MRFPAKRLDAPAGPTGPPAAPIRLKMLGMPIRLAAQGHAMKGDDSTMGALSHIRVLDLTRVLAGPWCAQTLADFGADVIK
IERPGAGDDTRHWGPPYLKDAHGADTAEAAYYLAANRNKRSVTVDIATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLD
YASLRAVKPDLVYCSVTGFGQTGPYAHRAGYDFIVQGIGGFMSITGERDGVPGGGPQKAGVAIADLATGLYSTIAVLAAL
AHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGTPPVRWGNAHPNIVPYQTFQTSDGWIIVAVGNDGQFRKFVEAGGR
PELADDERFATNPARVRHRDTLVPILAEMVKTRSKTAWIDALEAAGVPCGPINDLAEVFANEQVVARGMEVALPHPCGAD
VKLVRNPVRMSATPPDARTAPPLLGAHTDDVLRDMLGYDDARIAALKAKQAI

Sequences:

>Translated_452_residues
MRFPAKRLDAPAGPTGPPAAPIRLKMLGMPIRLAAQGHAMKGDDSTMGALSHIRVLDLTRVLAGPWCAQTLADFGADVIK
IERPGAGDDTRHWGPPYLKDAHGADTAEAAYYLAANRNKRSVTVDIATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLD
YASLRAVKPDLVYCSVTGFGQTGPYAHRAGYDFIVQGIGGFMSITGERDGVPGGGPQKAGVAIADLATGLYSTIAVLAAL
AHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGTPPVRWGNAHPNIVPYQTFQTSDGWIIVAVGNDGQFRKFVEAGGR
PELADDERFATNPARVRHRDTLVPILAEMVKTRSKTAWIDALEAAGVPCGPINDLAEVFANEQVVARGMEVALPHPCGAD
VKLVRNPVRMSATPPDARTAPPLLGAHTDDVLRDMLGYDDARIAALKAKQAI
>Mature_452_residues
MRFPAKRLDAPAGPTGPPAAPIRLKMLGMPIRLAAQGHAMKGDDSTMGALSHIRVLDLTRVLAGPWCAQTLADFGADVIK
IERPGAGDDTRHWGPPYLKDAHGADTAEAAYYLAANRNKRSVTVDIATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLD
YASLRAVKPDLVYCSVTGFGQTGPYAHRAGYDFIVQGIGGFMSITGERDGVPGGGPQKAGVAIADLATGLYSTIAVLAAL
AHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGTPPVRWGNAHPNIVPYQTFQTSDGWIIVAVGNDGQFRKFVEAGGR
PELADDERFATNPARVRHRDTLVPILAEMVKTRSKTAWIDALEAAGVPCGPINDLAEVFANEQVVARGMEVALPHPCGAD
VKLVRNPVRMSATPPDARTAPPLLGAHTDDVLRDMLGYDDARIAALKAKQAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=406, Percent_Identity=43.5960591133005, Blast_Score=361, Evalue=1e-100,
Organism=Homo sapiens, GI300863124, Length=432, Percent_Identity=40.9722222222222, Blast_Score=347, Evalue=2e-95,
Organism=Homo sapiens, GI13376042, Length=432, Percent_Identity=37.5, Blast_Score=299, Evalue=3e-81,
Organism=Homo sapiens, GI300863126, Length=406, Percent_Identity=38.1773399014778, Blast_Score=296, Evalue=3e-80,
Organism=Homo sapiens, GI266456254, Length=407, Percent_Identity=26.7813267813268, Blast_Score=133, Evalue=4e-31,
Organism=Homo sapiens, GI42794625, Length=407, Percent_Identity=26.7813267813268, Blast_Score=133, Evalue=4e-31,
Organism=Homo sapiens, GI266458397, Length=273, Percent_Identity=31.1355311355311, Blast_Score=119, Evalue=7e-27,
Organism=Homo sapiens, GI266458393, Length=273, Percent_Identity=31.1355311355311, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458395, Length=163, Percent_Identity=31.9018404907975, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI42822893, Length=163, Percent_Identity=31.9018404907975, Blast_Score=94, Evalue=3e-19,
Organism=Escherichia coli, GI87082093, Length=369, Percent_Identity=32.520325203252, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI1788717, Length=428, Percent_Identity=32.9439252336449, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI1786222, Length=416, Percent_Identity=23.7980769230769, Blast_Score=77, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32564160, Length=352, Percent_Identity=25.5681818181818, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=341, Percent_Identity=25.2199413489736, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=47.6426799007444, Blast_Score=370, Evalue=1e-102,
Organism=Drosophila melanogaster, GI24585488, Length=350, Percent_Identity=27.7142857142857, Blast_Score=117, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 48253; Mature: 48253

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFPAKRLDAPAGPTGPPAAPIRLKMLGMPIRLAAQGHAMKGDDSTMGALSHIRVLDLTR
CCCCHHHCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
VLAGPWCAQTLADFGADVIKIERPGAGDDTRHWGPPYLKDAHGADTAEAAYYLAANRNKR
HHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCC
SVTVDIATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYASLRAVKPDLVYCSVTGFG
EEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHCCCCCEEEEEEECCC
QTGPYAHRAGYDFIVQGIGGFMSITGERDGVPGGGPQKAGVAIADLATGLYSTIAVLAAL
CCCCCHHHCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH
AHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGTPPVRWGNAHPNIVPYQTFQTSDGW
HHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEECEEEEECCCCE
IIVAVGNDGQFRKFVEAGGRPELADDERFATNPARVRHRDTLVPILAEMVKTRSKTAWID
EEEEECCCCHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
ALEAAGVPCGPINDLAEVFANEQVVARGMEVALPHPCGADVKLVRNPVRMSATPPDARTA
HHHHCCCCCCCHHHHHHHHCCCHHHHCCCEEECCCCCCCCHHHHCCCCCCCCCCCCCCCC
PPLLGAHTDDVLRDMLGYDDARIAALKAKQAI
CCCCCCCHHHHHHHHHCCCCHHEEEHHHHHCC
>Mature Secondary Structure
MRFPAKRLDAPAGPTGPPAAPIRLKMLGMPIRLAAQGHAMKGDDSTMGALSHIRVLDLTR
CCCCHHHCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
VLAGPWCAQTLADFGADVIKIERPGAGDDTRHWGPPYLKDAHGADTAEAAYYLAANRNKR
HHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCC
SVTVDIATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYASLRAVKPDLVYCSVTGFG
EEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHCCCCCEEEEEEECCC
QTGPYAHRAGYDFIVQGIGGFMSITGERDGVPGGGPQKAGVAIADLATGLYSTIAVLAAL
CCCCCHHHCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH
AHRDRTGEGQYIDMALLDVQVALLANMNTNFLASGTPPVRWGNAHPNIVPYQTFQTSDGW
HHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEECEEEEECCCCE
IIVAVGNDGQFRKFVEAGGRPELADDERFATNPARVRHRDTLVPILAEMVKTRSKTAWID
EEEEECCCCHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
ALEAAGVPCGPINDLAEVFANEQVVARGMEVALPHPCGADVKLVRNPVRMSATPPDARTA
HHHHCCCCCCCHHHHHHHHCCCHHHHCCCEEECCCCCCCCHHHHCCCCCCCCCCCCCCCC
PPLLGAHTDDVLRDMLGYDDARIAALKAKQAI
CCCCCCCHHHHHHHHHCCCCHHEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]