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The map label for this gene is kdgR [H]

Identifier: 161524702

GI number: 161524702

Start: 1686700

End: 1687743

Strand: Direct

Name: kdgR [H]

Synonym: Bmul_1529

Alternate gene names: 161524702

Gene position: 1686700-1687743 (Clockwise)

Preceding gene: 161524701

Following gene: 161524703

Centisome position: 48.91

GC content: 70.31

Gene sequence:

>1044_bases
GTGACCGAATCGCAACCTTCCACGTCCCGTCCGGCGACGATCAGCGACGTCGCGCGCGAGGCCGGCACGGGCAAGACCAG
CGTTTCGCGCTATCTGAACGGCGAGACGCACGTGCTGTCGGCCGATCTGCGCCAGCGGATCGAAGCCGCGATCGCGCGGC
TCAACTACCGGCCGAACCAGATGGCGCGCGGGCTCAAGCGCGGCCGCAACCGGCTGCTCGGCATGCTCGCGGCCGACCTG
ACCAATCCGTATACCGTCGAAGTGCTGCAAGGCGTCGAGGCGGCGTGCCACGCGCTCGGCTACATGCCGCTGATCTGCCA
CGCCGCGAACGAAGTCGAGATGGAGCGCCGTTTTCTGCAGCTGCTGACCACGTATCGCGTCGAAGGGCTGATCGTGAACG
CGCTCGGCGCCGAAGAGGAGGTGCTGCGGCCGCTGCGCGGCGGCGGCATTCCGGCCGTGCTCGTCGACCGGACGGTCGAG
GGCTTCGAGGCCGACCTGATCGGCCTCGACAATGCGGACGCGATCGAGACGGCGCTCGCGCATCTGATCGAGCGCGGCTT
CGACGCGATCCATTTCGTCGTGCAGCCGTTCGAGCACGTCAGCTCGCGGCGGCTGCGCGAAGCCGCGTTCCGTGCGGCGC
TCGCCGCGCGCGGCATGCCGGTGTCGCCGACGGTCGTGCTCGATCTCAACGCGCCGCAGGCGGCCGCCGCCGCGCTGGCC
GAACTCGATGCTCGAATCGACGATGCCGCGCGGCGCGGCGTGCGCGCCGCGCTGTTCGCGGCAAACGCGCCGGTCGCGCT
CGCAATCGCGCGTCATCTGCGCGCCCGATTCGGCGCGGCGTGGCAGTCGAACGCCGCGCTGCTGTCGATCGACGATCCCG
AATGGGCCGAGCTGATCGGCATCACGACGATCCGTCAGCCGACCTACGAGATCGGCTACAAGGCGGTCGAGTTCGTGCAC
GAGCGGATCGACGGTGCGGGCGGCGACGTGCGCGTCGCGATGCTGCCCGGCGAGCTGATCGCGCGCGCGTCGACCGCAAG
CTGA

Upstream 100 bases:

>100_bases
ATCCGATCGACAGAGGAGTCCGCCAGGTGGCTTTCGTATCCAACAACAAAGGTCCGTCCGCCGGTGCAGCGGCGCGGACC
GCCCGTCGCGAGGCATCACA

Downstream 100 bases:

>100_bases
GTATCATTCGGGGCACGCGGCGCGTTCGGTGCGCCGCGCCCAACAAGGAACTCCATGACCGTTGCTCCCGTCACGCTGGC
CGTGCTGATTGCGGCCACGC

Product: LacI family transcription regulator

Products: NA

Alternate protein names: Kdg operon repressor [H]

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MTESQPSTSRPATISDVAREAGTGKTSVSRYLNGETHVLSADLRQRIEAAIARLNYRPNQMARGLKRGRNRLLGMLAADL
TNPYTVEVLQGVEAACHALGYMPLICHAANEVEMERRFLQLLTTYRVEGLIVNALGAEEEVLRPLRGGGIPAVLVDRTVE
GFEADLIGLDNADAIETALAHLIERGFDAIHFVVQPFEHVSSRRLREAAFRAALAARGMPVSPTVVLDLNAPQAAAAALA
ELDARIDDAARRGVRAALFAANAPVALAIARHLRARFGAAWQSNAALLSIDDPEWAELIGITTIRQPTYEIGYKAVEFVH
ERIDGAGGDVRVAMLPGELIARASTAS

Sequences:

>Translated_347_residues
MTESQPSTSRPATISDVAREAGTGKTSVSRYLNGETHVLSADLRQRIEAAIARLNYRPNQMARGLKRGRNRLLGMLAADL
TNPYTVEVLQGVEAACHALGYMPLICHAANEVEMERRFLQLLTTYRVEGLIVNALGAEEEVLRPLRGGGIPAVLVDRTVE
GFEADLIGLDNADAIETALAHLIERGFDAIHFVVQPFEHVSSRRLREAAFRAALAARGMPVSPTVVLDLNAPQAAAAALA
ELDARIDDAARRGVRAALFAANAPVALAIARHLRARFGAAWQSNAALLSIDDPEWAELIGITTIRQPTYEIGYKAVEFVH
ERIDGAGGDVRVAMLPGELIARASTAS
>Mature_346_residues
TESQPSTSRPATISDVAREAGTGKTSVSRYLNGETHVLSADLRQRIEAAIARLNYRPNQMARGLKRGRNRLLGMLAADLT
NPYTVEVLQGVEAACHALGYMPLICHAANEVEMERRFLQLLTTYRVEGLIVNALGAEEEVLRPLRGGGIPAVLVDRTVEG
FEADLIGLDNADAIETALAHLIERGFDAIHFVVQPFEHVSSRRLREAAFRAALAARGMPVSPTVVLDLNAPQAAAAALAE
LDARIDDAARRGVRAALFAANAPVALAIARHLRARFGAAWQSNAALLSIDDPEWAELIGITTIRQPTYEIGYKAVEFVHE
RIDGAGGDVRVAMLPGELIARASTAS

Specific function: Transcriptional repressor of the kdg operon for pectin utilization [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=325, Percent_Identity=29.5384615384615, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1790369, Length=348, Percent_Identity=25.8620689655172, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788474, Length=322, Percent_Identity=26.0869565217391, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787948, Length=319, Percent_Identity=28.5266457680251, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI48994940, Length=186, Percent_Identity=32.258064516129, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787906, Length=232, Percent_Identity=27.5862068965517, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789202, Length=208, Percent_Identity=29.3269230769231, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787580, Length=335, Percent_Identity=26.2686567164179, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786540, Length=345, Percent_Identity=25.7971014492754, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790689, Length=212, Percent_Identity=25.9433962264151, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789068, Length=339, Percent_Identity=23.8938053097345, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786268, Length=205, Percent_Identity=27.3170731707317, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790715, Length=175, Percent_Identity=26.8571428571429, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37395; Mature: 37264

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESQPSTSRPATISDVAREAGTGKTSVSRYLNGETHVLSADLRQRIEAAIARLNYRPNQ
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCHHH
MARGLKRGRNRLLGMLAADLTNPYTVEVLQGVEAACHALGYMPLICHAANEVEMERRFLQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHH
LLTTYRVEGLIVNALGAEEEVLRPLRGGGIPAVLVDRTVEGFEADLIGLDNADAIETALA
HHHHHHHHHEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCEECCCCCHHHHHHHH
HLIERGFDAIHFVVQPFEHVSSRRLREAAFRAALAARGMPVSPTVVLDLNAPQAAAAALA
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
ELDARIDDAARRGVRAALFAANAPVALAIARHLRARFGAAWQSNAALLSIDDPEWAELIG
HHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHH
ITTIRQPTYEIGYKAVEFVHERIDGAGGDVRVAMLPGELIARASTAS
HHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHCCCCC
>Mature Secondary Structure 
TESQPSTSRPATISDVAREAGTGKTSVSRYLNGETHVLSADLRQRIEAAIARLNYRPNQ
CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCHHH
MARGLKRGRNRLLGMLAADLTNPYTVEVLQGVEAACHALGYMPLICHAANEVEMERRFLQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHH
LLTTYRVEGLIVNALGAEEEVLRPLRGGGIPAVLVDRTVEGFEADLIGLDNADAIETALA
HHHHHHHHHEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCEECCCCCHHHHHHHH
HLIERGFDAIHFVVQPFEHVSSRRLREAAFRAALAARGMPVSPTVVLDLNAPQAAAAALA
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
ELDARIDDAARRGVRAALFAANAPVALAIARHLRARFGAAWQSNAALLSIDDPEWAELIG
HHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHH
ITTIRQPTYEIGYKAVEFVHERIDGAGGDVRVAMLPGELIARASTAS
HHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]