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The map label for this gene is ycfH [C]

Identifier: 161524556

GI number: 161524556

Start: 1526630

End: 1527409

Strand: Direct

Name: ycfH [C]

Synonym: Bmul_1383

Alternate gene names: 161524556

Gene position: 1526630-1527409 (Clockwise)

Preceding gene: 161524555

Following gene: 161524557

Centisome position: 44.27

GC content: 65.64

Gene sequence:

>780_bases
ATGTTCGTCGACTCTCATTGCCACATCAATTTCAAGGGTCTCGCCGATCGCCTGCCGGCGGTGCTCGAGAACATGCGCGA
GCATGACGTCACGCACGCGTTGTGCGTGTCCGTCGATTTCGAGACGCTGCCGGACGTGCTCGCGATCGCCGAAGCGCACG
ACAACGTCTATGCGTCGGTCGGCGTGCATCCCGATCACGAGGATGCGCGGGAACCGACGCTCGCCGAACTCGTCGAACTG
GCCGCGCATCCGAAGGTCGTCGCGATCGGCGAGACGGGCCTCGACTACTACCGCCTCGAAGGCCGCTCGATTGCCGACAT
GGAGTGGCAGCGCGAGCGCTTTCGCACGCACATCCGGGCCGCGACCGCGACGATGAAGCCGCTGATCGTCCATACGAGGG
CGTCGTCGGAGGACACGCTGCGGATCATGGCCGAGGAGCGCGCGGACGTGCCCGGCGGCGTGATGCACTGCTTCACCGAG
CCGTGGGCCGTCGCCGAGCAGGCGCTCGCGCAGAATTTCCACATCTCGCTGTCGGGCATCGTCACGTTCAAGAACGCGGC
CGACGTGCAGGACGTCGCGCGCCGCGTGCCGCTCGACCGGCTGCTGATCGAGACCGACTCGCCGTACCTCGCGCCGGTGC
CGTATCGCGGCAAGCCGAATGAACCTGCGTACGTGAGCCATGTCGGACGCTTTATCGCATCGGAGCGCGGCATCGCGGTC
GAGACGCTTGCCGACGCAACGACACAAAACTTTTTCCGGCTGTTCAAGATCGCCCGCTGA

Upstream 100 bases:

>100_bases
ATGATCAACGATTGTTTCCGTCGGGTTGCGAAACGATGACCGACACCTGCCGCGAGGCGACGCGCGCGTCGCGGCCGGCT
TTACGTATTCAGGAACCACG

Downstream 100 bases:

>100_bases
CGACGCGCTGCACAGCCGACAACCCAGGGAAGGAGCCCACAACAATGACGAAGCCGACCAAACATTTGCCGAAACGCGCG
CTCGCCGCTGCCGTGCTCGT

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDFETLPDVLAIAEAHDNVYASVGVHPDHEDAREPTLAELVEL
AAHPKVVAIGETGLDYYRLEGRSIADMEWQRERFRTHIRAATATMKPLIVHTRASSEDTLRIMAEERADVPGGVMHCFTE
PWAVAEQALAQNFHISLSGIVTFKNAADVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGIAV
ETLADATTQNFFRLFKIAR

Sequences:

>Translated_259_residues
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDFETLPDVLAIAEAHDNVYASVGVHPDHEDAREPTLAELVEL
AAHPKVVAIGETGLDYYRLEGRSIADMEWQRERFRTHIRAATATMKPLIVHTRASSEDTLRIMAEERADVPGGVMHCFTE
PWAVAEQALAQNFHISLSGIVTFKNAADVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGIAV
ETLADATTQNFFRLFKIAR
>Mature_259_residues
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDFETLPDVLAIAEAHDNVYASVGVHPDHEDAREPTLAELVEL
AAHPKVVAIGETGLDYYRLEGRSIADMEWQRERFRTHIRAATATMKPLIVHTRASSEDTLRIMAEERADVPGGVMHCFTE
PWAVAEQALAQNFHISLSGIVTFKNAADVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGIAV
ETLADATTQNFFRLFKIAR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=255, Percent_Identity=28.2352941176471, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI110349730, Length=268, Percent_Identity=28.3582089552239, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI110349734, Length=268, Percent_Identity=28.3582089552239, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI226061853, Length=273, Percent_Identity=27.8388278388278, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI14042943, Length=203, Percent_Identity=29.064039408867, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI226061614, Length=263, Percent_Identity=26.9961977186312, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI225903439, Length=174, Percent_Identity=31.0344827586207, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=26.1061946902655, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1787342, Length=264, Percent_Identity=46.969696969697, Blast_Score=207, Evalue=5e-55,
Organism=Escherichia coli, GI48994985, Length=216, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI87082439, Length=263, Percent_Identity=29.277566539924, Blast_Score=112, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17559024, Length=230, Percent_Identity=30.4347826086957, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17543026, Length=300, Percent_Identity=27.3333333333333, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17565396, Length=305, Percent_Identity=28.1967213114754, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71980746, Length=262, Percent_Identity=24.0458015267176, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648690, Length=292, Percent_Identity=25.3424657534247, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI221330018, Length=210, Percent_Identity=29.5238095238095, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24586117, Length=210, Percent_Identity=29.5238095238095, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28902; Mature: 28902

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDFETLPDVLAIAEAHDNVYASV
CEECCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEE
GVHPDHEDAREPTLAELVELAAHPKVVAIGETGLDYYRLEGRSIADMEWQRERFRTHIRA
CCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCEEEECCCEECCHHHHHHHHHHHHHH
ATATMKPLIVHTRASSEDTLRIMAEERADVPGGVMHCFTEPWAVAEQALAQNFHISLSGI
HHHHHCEEEEEECCCCCCCEEEEEHHCCCCCCHHHHHHCCCHHHHHHHHHHCCEEEEEEE
VTFKNAADVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGIAV
EEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCH
ETLADATTQNFFRLFKIAR
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFVDSHCHINFKGLADRLPAVLENMREHDVTHALCVSVDFETLPDVLAIAEAHDNVYASV
CEECCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEE
GVHPDHEDAREPTLAELVELAAHPKVVAIGETGLDYYRLEGRSIADMEWQRERFRTHIRA
CCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCEEEECCCEECCHHHHHHHHHHHHHH
ATATMKPLIVHTRASSEDTLRIMAEERADVPGGVMHCFTEPWAVAEQALAQNFHISLSGI
HHHHHCEEEEEECCCCCCCEEEEEHHCCCCCCHHHHHHCCCHHHHHHHHHHCCEEEEEEE
VTFKNAADVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIASERGIAV
EEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCH
ETLADATTQNFFRLFKIAR
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]