BacMap

Definition	Burkholderia multivorans ATCC 17616 chromosome chromosome 1, complete sequence.
Accession	NC_010084
Length	3,448,466

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The map label for this gene is ygfF [C]

Identifier: 161523995

GI number: 161523995

Start: 891572

End: 892309

Strand: Reverse

Name: ygfF [C]

Synonym: Bmul_0815

Alternate gene names: 161523995

Gene position: 892309-891572 (Counterclockwise)

Preceding gene: 161523996

Following gene: 161523993

Centisome position: 25.88

GC content: 70.19

Gene sequence:

>738_bases
ATGAACACATCGAACCAGGTCGCCGTCGTCACGGGTGCGTCGCGCGGAATCGGCGCGGAAATCGCGCGCCGTCTCGCGGC
CGACGGATTCAAGGTCGTCGTCAACTATGCGGGCAGCGGCGACGCCGCGCGCGACGTCGTCGACGCGATCACGGCGGCCG
GTGGCGAGGCGCTCGCCGTGCAGGCGGACGTCGCGGACGCGAGCGCGGTCGCCGCACTGTTCGACACGGCGACGCGCGCG
TTCGGCGGCATCGACGTCGTCGTCAACAGCGCCGGCGTGATGAAGCTCGCGCCGATCGCCGACTGCGACGACGCCGCGTT
CGACGAGACGATCGCGATCAATCTGAAAGGCACGTTCAACGTATGCCGCGAGGCGGCGAAGCGCGTGCGCGACGGCGGCC
GCATCGTGACCCTATCGACGAGCGTGATCGGCATGCGCCTGCCGACCTACGGCGTCTACGTCGCGAGCAAGGCGGCCGTC
GAAAGCCTCACGCAGGTGCTCGCGCAGGAAATGCGCGGGCGCGCGATTCGCGTGAACGCGGTCGCGCCGGGGCCGGTCGC
GACCGAGCTGTTCCTGCGCGGCAAAGGCCCGGAGCAGATCGAGCGGCTCGCCAAGATGAATCCGCTCGAACGGATCGGCC
AGCCCGACGACATCGCGGGCGTCGTCGCCTTCCTCGCCGGCCCGGACGGCGCATGGATCAACGGTCAGATCCTGCGCGCG
AACGGCGGGATGTGCTGA

Upstream 100 bases:

>100_bases
CATTCATGATCTGAGCATTATTCATTATTTTTATTGGCTGCGGCGGCTTACATTGGTCCTGTCGCCGGCCCGGCCGGCAT
TCACGAACAAGGAGCAGGAC

Downstream 100 bases:

>100_bases
TCGCGGCGCGTCAGCGCTGCGCGCAGAACGCGAGGACCGCATCCGCGACGGCCGCGGGCGCCTCACGCTGCGGAAAGTGC
CCGACGCCGTCGAGCAGCTG

Product: short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MNTSNQVAVVTGASRGIGAEIARRLAADGFKVVVNYAGSGDAARDVVDAITAAGGEALAVQADVADASAVAALFDTATRA
FGGIDVVVNSAGVMKLAPIADCDDAAFDETIAINLKGTFNVCREAAKRVRDGGRIVTLSTSVIGMRLPTYGVYVASKAAV
ESLTQVLAQEMRGRAIRVNAVAPGPVATELFLRGKGPEQIERLAKMNPLERIGQPDDIAGVVAFLAGPDGAWINGQILRA
NGGMC

Sequences:

>Translated_245_residues
MNTSNQVAVVTGASRGIGAEIARRLAADGFKVVVNYAGSGDAARDVVDAITAAGGEALAVQADVADASAVAALFDTATRA
FGGIDVVVNSAGVMKLAPIADCDDAAFDETIAINLKGTFNVCREAAKRVRDGGRIVTLSTSVIGMRLPTYGVYVASKAAV
ESLTQVLAQEMRGRAIRVNAVAPGPVATELFLRGKGPEQIERLAKMNPLERIGQPDDIAGVVAFLAGPDGAWINGQILRA
NGGMC
>Mature_245_residues
MNTSNQVAVVTGASRGIGAEIARRLAADGFKVVVNYAGSGDAARDVVDAITAAGGEALAVQADVADASAVAALFDTATRA
FGGIDVVVNSAGVMKLAPIADCDDAAFDETIAINLKGTFNVCREAAKRVRDGGRIVTLSTSVIGMRLPTYGVYVASKAAV
ESLTQVLAQEMRGRAIRVNAVAPGPVATELFLRGKGPEQIERLAKMNPLERIGQPDDIAGVVAFLAGPDGAWINGQILRA
NGGMC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=35.7429718875502, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=34.8, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI5031737, Length=239, Percent_Identity=33.8912133891213, Blast_Score=111, Evalue=6e-25,
Organism=Homo sapiens, GI15277342, Length=250, Percent_Identity=35.2, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=30.8943089430894, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=30.8300395256917, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI19923817, Length=248, Percent_Identity=29.4354838709677, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=33.8541666666667, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI109715829, Length=237, Percent_Identity=27.8481012658228, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI7705925, Length=240, Percent_Identity=27.5, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=34.9462365591398, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=35.2331606217617, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=29.4573643410853, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI223718074, Length=216, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI40254986, Length=184, Percent_Identity=27.7173913043478, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI31542939, Length=233, Percent_Identity=28.755364806867, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=28.3505154639175, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI7657478, Length=199, Percent_Identity=32.1608040201005, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4503301, Length=203, Percent_Identity=26.6009852216749, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI59889578, Length=196, Percent_Identity=29.0816326530612, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI209862901, Length=251, Percent_Identity=29.8804780876494, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI19923983, Length=251, Percent_Identity=29.8804780876494, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI4502601, Length=248, Percent_Identity=28.2258064516129, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI4502599, Length=190, Percent_Identity=31.0526315789474, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=34.5528455284553, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=34.0248962655602, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1787905, Length=240, Percent_Identity=34.5833333333333, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=33.739837398374, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1789378, Length=239, Percent_Identity=31.7991631799163, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=35.0597609561753, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=31.9838056680162, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=32.7935222672065, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=28.9795918367347, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1790717, Length=239, Percent_Identity=27.6150627615063, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=32.156862745098, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=28.90625, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786701, Length=190, Percent_Identity=28.9473684210526, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787526, Length=246, Percent_Identity=25.2032520325203, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787820, Length=227, Percent_Identity=25.5506607929515, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=31.1740890688259, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=28.8, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17536651, Length=246, Percent_Identity=30.0813008130081, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=30.0813008130081, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=30.6122448979592, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=246, Percent_Identity=29.6747967479675, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=30.0395256916996, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=30.1526717557252, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=28.4552845528455, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=258, Percent_Identity=29.0697674418605, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=258, Percent_Identity=29.8449612403101, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17561272, Length=212, Percent_Identity=29.7169811320755, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=30.7692307692308, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI115534694, Length=240, Percent_Identity=29.5833333333333, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=29.9610894941634, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17544670, Length=244, Percent_Identity=27.0491803278689, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=29.9610894941634, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI72000259, Length=256, Percent_Identity=29.6875, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=258, Percent_Identity=31.0077519379845, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=29.1187739463602, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=31.2169312169312, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=29.6992481203008, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=259, Percent_Identity=30.5019305019305, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=29.3893129770992, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=259, Percent_Identity=29.7297297297297, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=29.811320754717, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=253, Percent_Identity=27.2727272727273, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=28.8973384030418, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17558628, Length=189, Percent_Identity=32.8042328042328, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=29.6992481203008, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=30.1204819277108, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=250, Percent_Identity=30, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=27.8810408921933, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=210, Percent_Identity=29.0476190476191, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=219, Percent_Identity=31.9634703196347, Blast_Score=79, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6324126, Length=185, Percent_Identity=30.8108108108108, Blast_Score=78, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=196, Percent_Identity=29.5918367346939, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=250, Percent_Identity=28.8, Blast_Score=69, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=35.1020408163265, Blast_Score=114, Evalue=9e-26,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=33.3333333333333, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=33.596837944664, Blast_Score=103, Evalue=8e-23,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=30.4, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=33.4645669291339, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24663911, Length=253, Percent_Identity=30.4347826086957, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=28.2352941176471, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24641232, Length=254, Percent_Identity=31.1023622047244, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24643142, Length=241, Percent_Identity=28.2157676348548, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24648693, Length=208, Percent_Identity=33.1730769230769, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21355889, Length=208, Percent_Identity=33.1730769230769, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24648944, Length=246, Percent_Identity=31.7073170731707, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24644337, Length=211, Percent_Identity=30.8056872037915, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI116007234, Length=238, Percent_Identity=30.672268907563, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=29.3436293436293, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007236, Length=257, Percent_Identity=28.4046692607004, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI281364494, Length=256, Percent_Identity=29.296875, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21357673, Length=185, Percent_Identity=31.3513513513514, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571387, Length=252, Percent_Identity=29.7619047619048, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI18859837, Length=235, Percent_Identity=33.6170212765957, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641388, Length=201, Percent_Identity=32.8358208955224, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI116007232, Length=188, Percent_Identity=30.8510638297872, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI116007238, Length=186, Percent_Identity=31.1827956989247, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24665243, Length=202, Percent_Identity=29.7029702970297, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI221331218, Length=202, Percent_Identity=29.7029702970297, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI221331216, Length=203, Percent_Identity=30.0492610837438, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24665247, Length=203, Percent_Identity=30.0492610837438, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 25156; Mature: 25156

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSNQVAVVTGASRGIGAEIARRLAADGFKVVVNYAGSGDAARDVVDAITAAGGEALAV
CCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEE
QADVADASAVAALFDTATRAFGGIDVVVNSAGVMKLAPIADCDDAAFDETIAINLKGTFN
EECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCCCCCCCCEEEEEECCHHH
VCREAAKRVRDGGRIVTLSTSVIGMRLPTYGVYVASKAAVESLTQVLAQEMRGRAIRVNA
HHHHHHHHHHCCCEEEEEECCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEE
VAPGPVATELFLRGKGPEQIERLAKMNPLERIGQPDDIAGVVAFLAGPDGAWINGQILRA
ECCCCHHEEHEEECCCHHHHHHHHHCCHHHHCCCCCHHHHHHHEEECCCCCEECCEEEEC
NGGMC
CCCCC
>Mature Secondary Structure
MNTSNQVAVVTGASRGIGAEIARRLAADGFKVVVNYAGSGDAARDVVDAITAAGGEALAV
CCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEE
QADVADASAVAALFDTATRAFGGIDVVVNSAGVMKLAPIADCDDAAFDETIAINLKGTFN
EECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCCCCCCCCEEEEEECCHHH
VCREAAKRVRDGGRIVTLSTSVIGMRLPTYGVYVASKAAVESLTQVLAQEMRGRAIRVNA
HHHHHHHHHHCCCEEEEEECCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEE
VAPGPVATELFLRGKGPEQIERLAKMNPLERIGQPDDIAGVVAFLAGPDGAWINGQILRA
ECCCCHHEEHEEECCCHHHHHHHHHCCHHHHCCCCCHHHHHHHEEECCCCCEECCEEEEC
NGGMC
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]