| Definition | Burkholderia multivorans ATCC 17616 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010084 |
| Length | 3,448,466 |
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The map label for this gene is dacB [H]
Identifier: 161523859
GI number: 161523859
Start: 743035
End: 744567
Strand: Reverse
Name: dacB [H]
Synonym: Bmul_0679
Alternate gene names: 161523859
Gene position: 744567-743035 (Counterclockwise)
Preceding gene: 161523866
Following gene: 161523858
Centisome position: 21.59
GC content: 71.04
Gene sequence:
>1533_bases ATGCCGATTTCCGCTCTCTCCACCCGGTTCGCCCCGCGCGCACGCGTCTGCCTGCGCGCGGCCGCCGTCGTCGCCACCTG CACGGCGCTCGCGTTCGCGCCCGCCGCACACGCCCGCAAGAAACCCCACAAGGACGCGCGACGCGCGCCGGTCGTCTCGG CGGCCGCGCGCGACGCCGGCCTGCCGGCGTCCGTGCTCGTCGCACTGCAGCGCGCGAAGGTGCCGGCGTCGGCGATGAGC GTCGTCGTCGAGCGCGTCGGCGATCCGCAGCCGCTGATCGCATGGAACGCGAATCGGCCGATGCTGCCCGCGTCGACGAT GAAGCTCGTCACGACGTTCGCGGGCCTGTCGATCCTCGGCCCCGAGTTCCGCTGGCGCACGACCGCGTATGCGGACGGCC CGGTCGATCCGGACGGCACGCTGCAGGGCAACCTCTACATCAAGGGCACCGGCGATCCGAAGCTCGTGCCCGAGGAACTG ATCGACCTCGTCGACAAGATCCGCAAGGCCGGCATCAAGCGCGTCGCCGGCGGCCTCGTGCTCGACAAGAGCTATTTCGC GGCGTCGACGCGCGACCTGCCGTCGTTCGACGACGACGTGAGCGCGCCGTACAACGTCGGGCCCGACCCGCTGCTCTACG CGTTCAAGGCGATCTCGTTTACGGTCACGCCGGGCGAAGACGGCAAGGTCGCCGTCGACGTGCTGCCGCCGCTCGCGAAC CTGTCGATCGACAACCAGCTGTACGAAGGCAGCGGCTCGTGCGCGAGCGCGGCGGCGGCCGCGCGCCCGACGCTGAACGC CGACGGCGCGATGCTGACCGCGTCGTTCGCCGGCGACTACCCGCTGCGCTGCGGCGCGCGCACGACCAATCTCGCGATCC TCGATCACACGACGTTCTTCGCGCGCGGCTTCCTCGCGCTCTGGCAGCAGGACGGCGGCACGATCGCGGGCCCGGTCGCC GAAGGCAAGGTGCCGAGCGCCGCGCGGCCGATCGCCGTGCACCACGGCCCGGTGCTCGGCAGTGTCGTGTACGACATCAA CAAGTTCAGCAACAACGTGATGGCGCGCAACCTGTTCCTGACGATCGGCGCGGTCGCCGGCAAGCCGCCCGCGACGCCCG AGCAGTCGAGCCGCGTGATCCGCGCGTTCCTGCAGAAGAACGGCATCGCGATGCCCGACCTCGTGCTCGACAACGGCTCG GGGCTGTCGCGCGACGAACACGTGAGCGCGCTGTCGCTCGCCGCGCTGCTGCAGGCCGCGAACGCGAGCCCGGTCGCGCA GGCGTTCGTCGACTCGCTGCCGATCGCCGGCATCGACGGCACGATGAAGAACCGCCTGACCAACGCCGGCGTGCTCGGCA ACGCGCACATCAAGACCGGCACGCTGCGCGACGTGCGCGCGATCGCCGGCTACGTCGCGGGCGCGGACGGCCAGAGCTAC GTGGTCGTCAGCTTCATCAACGACGATCATGCGGAAGCCGCACGCGCCGCGCACGACACGCTGCTCGAGTGGATCTACGC GGGCGCGCACTGA
Upstream 100 bases:
>100_bases GCCCTCCGCGATTTCGTCGTACTTGTCGCACTTGTCTCTACAATGTGCGCTTCGGCGCGCCGCGCGCCTTGCCCGAGCTC CCGCTTTTCCGTATTCGTCC
Downstream 100 bases:
>100_bases CGCACGCGGCCCCGCCGAAACGGGGCCGCACCGCCCGCCCACGCCCGGCGCGGCTTCGGTGAAAACCCTATCGTCAGAGG GAACCCTCTACGCTGCCCTC
Product: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
Products: NA
Alternate protein names: DD-carboxypeptidase; DD-peptidase; D-alanyl-D-alanine endopeptidase; DD-endopeptidase; Penicillin-binding protein 4; PBP-4 [H]
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MPISALSTRFAPRARVCLRAAAVVATCTALAFAPAAHARKKPHKDARRAPVVSAAARDAGLPASVLVALQRAKVPASAMS VVVERVGDPQPLIAWNANRPMLPASTMKLVTTFAGLSILGPEFRWRTTAYADGPVDPDGTLQGNLYIKGTGDPKLVPEEL IDLVDKIRKAGIKRVAGGLVLDKSYFAASTRDLPSFDDDVSAPYNVGPDPLLYAFKAISFTVTPGEDGKVAVDVLPPLAN LSIDNQLYEGSGSCASAAAAARPTLNADGAMLTASFAGDYPLRCGARTTNLAILDHTTFFARGFLALWQQDGGTIAGPVA EGKVPSAARPIAVHHGPVLGSVVYDINKFSNNVMARNLFLTIGAVAGKPPATPEQSSRVIRAFLQKNGIAMPDLVLDNGS GLSRDEHVSALSLAALLQAANASPVAQAFVDSLPIAGIDGTMKNRLTNAGVLGNAHIKTGTLRDVRAIAGYVAGADGQSY VVVSFINDDHAEAARAAHDTLLEWIYAGAH
Sequences:
>Translated_510_residues MPISALSTRFAPRARVCLRAAAVVATCTALAFAPAAHARKKPHKDARRAPVVSAAARDAGLPASVLVALQRAKVPASAMS VVVERVGDPQPLIAWNANRPMLPASTMKLVTTFAGLSILGPEFRWRTTAYADGPVDPDGTLQGNLYIKGTGDPKLVPEEL IDLVDKIRKAGIKRVAGGLVLDKSYFAASTRDLPSFDDDVSAPYNVGPDPLLYAFKAISFTVTPGEDGKVAVDVLPPLAN LSIDNQLYEGSGSCASAAAAARPTLNADGAMLTASFAGDYPLRCGARTTNLAILDHTTFFARGFLALWQQDGGTIAGPVA EGKVPSAARPIAVHHGPVLGSVVYDINKFSNNVMARNLFLTIGAVAGKPPATPEQSSRVIRAFLQKNGIAMPDLVLDNGS GLSRDEHVSALSLAALLQAANASPVAQAFVDSLPIAGIDGTMKNRLTNAGVLGNAHIKTGTLRDVRAIAGYVAGADGQSY VVVSFINDDHAEAARAAHDTLLEWIYAGAH >Mature_509_residues PISALSTRFAPRARVCLRAAAVVATCTALAFAPAAHARKKPHKDARRAPVVSAAARDAGLPASVLVALQRAKVPASAMSV VVERVGDPQPLIAWNANRPMLPASTMKLVTTFAGLSILGPEFRWRTTAYADGPVDPDGTLQGNLYIKGTGDPKLVPEELI DLVDKIRKAGIKRVAGGLVLDKSYFAASTRDLPSFDDDVSAPYNVGPDPLLYAFKAISFTVTPGEDGKVAVDVLPPLANL SIDNQLYEGSGSCASAAAAARPTLNADGAMLTASFAGDYPLRCGARTTNLAILDHTTFFARGFLALWQQDGGTIAGPVAE GKVPSAARPIAVHHGPVLGSVVYDINKFSNNVMARNLFLTIGAVAGKPPATPEQSSRVIRAFLQKNGIAMPDLVLDNGSG LSRDEHVSALSLAALLQAANASPVAQAFVDSLPIAGIDGTMKNRLTNAGVLGNAHIKTGTLRDVRAIAGYVAGADGQSYV VVSFINDDHAEAARAAHDTLLEWIYAGAH
Specific function: Not involved in transpeptidation but exclusively catalyzes a DD-carboxypeptidase and DD-endopeptidase reaction [H]
COG id: COG2027
COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S13 family [H]
Homologues:
Organism=Escherichia coli, GI1789573, Length=451, Percent_Identity=26.3858093126386, Blast_Score=137, Evalue=1e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR000667 [H]
Pfam domain/function: PF02113 Peptidase_S13 [H]
EC number: =3.4.16.4 [H]
Molecular weight: Translated: 53231; Mature: 53100
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPISALSTRFAPRARVCLRAAAVVATCTALAFAPAAHARKKPHKDARRAPVVSAAARDAG CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHCCCHHHHHHHCCC LPASVLVALQRAKVPASAMSVVVERVGDPQPLIAWNANRPMLPASTMKLVTTFAGLSILG CCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHCHHHCC PEFRWRTTAYADGPVDPDGTLQGNLYIKGTGDPKLVPEELIDLVDKIRKAGIKRVAGGLV CCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEE LDKSYFAASTRDLPSFDDDVSAPYNVGPDPLLYAFKAISFTVTPGEDGKVAVDVLPPLAN EECHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEHEEEEECCCCCCCEEEEECCCCCC LSIDNQLYEGSGSCASAAAAARPTLNADGAMLTASFAGDYPLRCGARTTNLAILDHTTFF CCCCCCEECCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCEECCCCCCEEEEEECHHHH ARGFLALWQQDGGTIAGPVAEGKVPSAARPIAVHHGPVLGSVVYDINKFSNNVMARNLFL HHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHEEEEE TIGAVAGKPPATPEQSSRVIRAFLQKNGIAMPDLVLDNGSGLSRDEHVSALSLAALLQAA EEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHC NASPVAQAFVDSLPIAGIDGTMKNRLTNAGVLGNAHIKTGTLRDVRAIAGYVAGADGQSY CCCHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCEEECCCHHHHHHHHHHHCCCCCCCE VVVSFINDDHAEAARAAHDTLLEWIYAGAH EEEEEECCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PISALSTRFAPRARVCLRAAAVVATCTALAFAPAAHARKKPHKDARRAPVVSAAARDAG CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHCCCHHHHHHHCCC LPASVLVALQRAKVPASAMSVVVERVGDPQPLIAWNANRPMLPASTMKLVTTFAGLSILG CCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHCHHHCC PEFRWRTTAYADGPVDPDGTLQGNLYIKGTGDPKLVPEELIDLVDKIRKAGIKRVAGGLV CCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEE LDKSYFAASTRDLPSFDDDVSAPYNVGPDPLLYAFKAISFTVTPGEDGKVAVDVLPPLAN EECHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEHEEEEECCCCCCCEEEEECCCCCC LSIDNQLYEGSGSCASAAAAARPTLNADGAMLTASFAGDYPLRCGARTTNLAILDHTTFF CCCCCCEECCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCEECCCCCCEEEEEECHHHH ARGFLALWQQDGGTIAGPVAEGKVPSAARPIAVHHGPVLGSVVYDINKFSNNVMARNLFL HHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHEEEEE TIGAVAGKPPATPEQSSRVIRAFLQKNGIAMPDLVLDNGSGLSRDEHVSALSLAALLQAA EEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHC NASPVAQAFVDSLPIAGIDGTMKNRLTNAGVLGNAHIKTGTLRDVRAIAGYVAGADGQSY CCCHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCEEECCCHHHHHHHHHHHCCCCCCCE VVVSFINDDHAEAARAAHDTLLEWIYAGAH EEEEEECCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]